PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G001500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ZF-HD | ||||||||
Protein Properties | Length: 171aa MW: 19005.1 Da PI: 8.3814 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.6 | 6.9e-29 | 10 | 61 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +YkeCl+NhAaslG++a+DGCgEf+ + ++++++l+CaACgCHRnFHR+ + Manes.06G001500.1.p 10 DVYKECLRNHAASLGSYATDGCGEFTLD---HTSPSTLQCAACGCHRNFHRKVTY 61 58*************************8...6789*****************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.7E-24 | 11 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-17 | 12 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.99 | 12 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.2E-24 | 12 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-29 | 86 | 155 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.71E-16 | 88 | 153 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.9E-30 | 96 | 153 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDGGDHTTND VYKECLRNHA ASLGSYATDG CGEFTLDHTS PSTLQCAACG CHRNFHRKVT 60 YSSSSSRPDQ STVMEMMEYV DVGSRLPGER SSGKTKRFRT KFTAEQKEKM LGFAEKLGWK 120 LQRKDEEDEV ERFCRGVGIS RQVFKVWMHN HKNSSSSSST TGNASSLTTQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-24 | 95 | 158 | 17 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G001500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021616895.1 | 1e-126 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2XLF4 | 9e-41 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 9e-41 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q9SB61 | 7e-41 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2C9VN31 | 1e-124 | A0A2C9VN31_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033936m | 1e-125 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-42 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G001500.1.p |
Publications ? help Back to Top | |||
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