PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G208100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24192.9 Da    PI: 9.9925
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G208100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41e-142169149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k+ien+    +tfskRr gi KKA+EL +L++++ a  +fs+ gk + +
  Manes.05G208100.1.p 21 KKIENQDVMFITFSKRRSGIYKKASELITLTGVKLAFTVFSPAGKPFSF 69
                         689*****************************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.6471373IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-201372IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-211488IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-141535IPR002100Transcription factor, MADS-box
PfamPF003198.9E-182269IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-143550IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-145071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MATTTEIQEK KTKGRQRIEM KKIENQDVMF ITFSKRRSGI YKKASELITL TGVKLAFTVF  60
SPAGKPFSFA HPSVDAIANR FLSKQPQANT QSSTHPLVEA HCQVKIEELN RQNHELLCQL  120
DSLKKKGKQL KQRMTGKEIK GWWDTPIEEM NVEQMLEVEA ACKEIQTKLI NKLKFKTDGG  180
ASSSPAYHQA QMLNPFSPVG VNNTNLPVFP PDFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128LKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G208100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612996.11e-159agamous-like MADS-box protein AGL62
TrEMBLA0A2C9VYD01e-158A0A2C9VYD0_MANES; Uncharacterized protein
STRINGcassava4.1_025465m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-38AGAMOUS-like 62