PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G203600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRAS

Protein Properties

Length: 451aa MW: 50092.1 Da PI: 6.6994

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G203600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	413.1	2.5e-126	50	449	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn........sseelaal 81 +++lL++cAe +s++d+++a++l++ ls +sp+gd+ +Rl++ f++AL+ rl+ +++ ++ l + ++ +++ s+ + Manes.05G203600.1.p 50 MRQLLITCAELISQSDFSAAHRLISVLSASSSPYGDSRERLVHQFVKALSLRLNPHGNAMATVLmNITNLPSSGggggigsaSTA----T 135 589**************************************************999999988455555554488887644333....1 PP GRAS 82 ......................klfsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRi 144 +++++P+++fshltaNqaIlea+e g++++HiiDfdi++G+QWp+L+qaLa+R+ +pp lRi Manes.05G203600.1.p 136 vsainvgslftreseealqscyLSLNQITPFIRFSHLTANQAILEAIEvGQRAIHIIDFDIMHGVQWPPLMQALAERSsntlYPPPALRI 225 345689999999999888775334*******************9456999********************777778** PP GRAS 145 TgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233 Tg g+ + ++l++tg+rL kfA++lg++f+f++l+ +++ + ++ + p+EalaVn+vl lhrll+++ + +L+ +k Manes.05G203600.1.p 226 TGTGH----DLNTLNRTGDRLLKFAQSLGLKFQFHPLLLLNTDPSsLPFAITLLPDEALAVNCVLYLHRLLKDDSRGL---RIFLNRIKA 308 *....9**********************9555444331477889999***********96655444...47*** PP GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 l+Pkvv+++e+ea+hn++ F++rfleal++y+alfdslea+lp++s+er vE+ ++grei+n+va+ g++rrerhe++e+W+++l++ G Manes.05G203600.1.p 309 LNPKVVTIAEREANHNHPFFFQRFLEALDHYTALFDSLEATLPPNSRERLAVEQIWFGREIMNIVAADGEDRRERHERFESWEMMLRSTG 398 ************************************************************************************** PP GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 F++vpls +a +qaklllr ++ s+gy++e ++s++lgW++++L+svS+W Manes.05G203600.1.p 399 FTNVPLSPFALSQAKLLLRLHYpSEGYHIEIVNNSFILGWQSHSLFSVSSW 449 ************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.509	24	429	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-124	50	449	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MLGSLNSSSS SSLDQEEKEA LDLQYLENLM APPVAPRGTT SSFTPSAIHM RQLLITCAEL 60 ISQSDFSAAH RLISVLSASS SPYGDSRERL VHQFVKALSL RLNPHGNAMA TVLMNITNLP 120 SSGGGGGIGS ASTATVSAIN VGSLFTRESE EALQSCYLSL NQITPFIRFS HLTANQAILE 180 AIEVGQRAIH IIDFDIMHGV QWPPLMQALA ERSSNTLYPP PALRITGTGH DLNTLNRTGD 240 RLLKFAQSLG LKFQFHPLLL LNTDPSSLPF AITLLPDEAL AVNCVLYLHR LLKDDSRGLR 300 IFLNRIKALN PKVVTIAERE ANHNHPFFFQ RFLEALDHYT ALFDSLEATL PPNSRERLAV 360 EQIWFGREIM NIVAADGEDR RERHERFESW EMMLRSTGFT NVPLSPFALS QAKLLLRLHY 420 PSEGYHIEIV NNSFILGWQS HSLFSVSSWH *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MLGSLNSSSS SSLDQEEKEA LDLQYLENLM APPVAPRGTT SSFTPSAIHM RQLLITCAEL  60
ISQSDFSAAH RLISVLSASS SPYGDSRERL VHQFVKALSL RLNPHGNAMA TVLMNITNLP  120
SSGGGGGIGS ASTATVSAIN VGSLFTRESE EALQSCYLSL NQITPFIRFS HLTANQAILE  180
AIEVGQRAIH IIDFDIMHGV QWPPLMQALA ERSSNTLYPP PALRITGTGH DLNTLNRTGD  240
RLLKFAQSLG LKFQFHPLLL LNTDPSSLPF AITLLPDEAL AVNCVLYLHR LLKDDSRGLR  300
IFLNRIKALN PKVVTIAERE ANHNHPFFFQ RFLEALDHYT ALFDSLEATL PPNSRERLAV  360
EQIWFGREIM NIVAADGEDR RERHERFESW EMMLRSTGFT NVPLSPFALS QAKLLLRLHY  420
PSEGYHIEIV NNSFILGWQS HSLFSVSSWH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-63	57	449	26	378	Protein SCARECROW
5b3h_A	9e-63	57	449	25	377	Protein SCARECROW
5b3h_D	9e-63	57	449	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G203600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614432.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-141	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A2C9W0C4	0.0	A0A2C9W0C4_MANES; Uncharacterized protein
STRING	cassava4.1_022511m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12926	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-140	GRAS family protein

Link Out ? help Back to Top
Phytozome	Manes.05G203600.1.p

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]