PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G199100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 1018aa MW: 109081 Da PI: 4.3298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G199100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H Manes.05G199100.1.p 20 HVCHKCGWPFPNPHPSAKHRRAH 42 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	22	42	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1018 aa Download sequence Send to blast
MDNQDHRRRH TPGHDSHGVH VCHKCGWPFP NPHPSAKHRR AHRKICGTIK GYKLVDSESP 60 AHLTVSDDEH LSDEDRKTRG PRILGRSNNE KGSVETGDRS GRPENEVFSD SGFRRGIEES 120 PDDVNMPAKN ETTATLSVKD GAIAAAVPPS SNSANSSQMQ NTEVEGSNLS VSAQQSQDNV 180 SSATASFMDR SSTDYRTEEA VYEPTNDKKG STCDSNTIQL GTQADTSWEM NEKTAGEDLA 240 ENVAKGNEET QTKTNSAVDG LTEIDTNTNE ETSLGRPLLD AVVLPCDNVG EASESVGKME 300 DIMSGPVSAA GVIQLKEQSN DELDSKISLN DLPNEIKSVE LVNTSIGTAQ VKADDDQAMD 360 AANLGKSTNF YNGHVEGNDN VHVLSVPDDL PVVDNAEVMI RGFKDHKGGG LLQLVGVDFK 420 DDSSNFCSSI LNEEGTEVSA SDMHALKSDH EQKCESDEHV VENFPDETEP VMPQVKMTGN 480 ESQSTEQIGV PTAAVAIAIE ENGPLQCPEE QLPSDCCESS LQKSSVEHAT KVLPDMNPVA 540 AQVISEVMQT TNLVGADDAD DYENSKIRRC DIAESEDKRI TDKNSTENII ANETVTEEGY 600 STLGSMEGKV SVETPVSTTE SGENLQESNF TSENVINASK SNLSEYECLQ LSTVSDNQKC 660 VKELESNGNR KVQVEGGDKV SAAAESINVE DSDELQKSAD KVGDVELLRG PSDIINDVVL 720 QKSSEDGTKE PQLSPSDISS SIQNSATAGD NSAGDFVGVV SENQLESSPD EGESKSVAQQ 780 LGASVTDFSV DSGSQTDSLE GHWGSVSVLS TQSDMPAIVD AEASNGSKAS VKAEKADLTK 840 PKAFSEGQHS DKSDIFEPPS FTTLVEPRDG DKAAAAASSK IQTTQNPNQP AGWFPSLTHV 900 TNESQGRKKN EEIIAKVTNW SAGKQHTPLK NLLSEANIET KSKSLNAKEN LVVKKDESSS 960 KDNGASGPQV PISEPVKKEA GKEWNSPARY PTDIKGEKKK VKGRPSWAQF MCCASVN*

Sequence ? help Back to Top

Protein Sequence Length: 1018 aa Download sequence Send to blast

MDNQDHRRRH TPGHDSHGVH VCHKCGWPFP NPHPSAKHRR AHRKICGTIK GYKLVDSESP  60
AHLTVSDDEH LSDEDRKTRG PRILGRSNNE KGSVETGDRS GRPENEVFSD SGFRRGIEES  120
PDDVNMPAKN ETTATLSVKD GAIAAAVPPS SNSANSSQMQ NTEVEGSNLS VSAQQSQDNV  180
SSATASFMDR SSTDYRTEEA VYEPTNDKKG STCDSNTIQL GTQADTSWEM NEKTAGEDLA  240
ENVAKGNEET QTKTNSAVDG LTEIDTNTNE ETSLGRPLLD AVVLPCDNVG EASESVGKME  300
DIMSGPVSAA GVIQLKEQSN DELDSKISLN DLPNEIKSVE LVNTSIGTAQ VKADDDQAMD  360
AANLGKSTNF YNGHVEGNDN VHVLSVPDDL PVVDNAEVMI RGFKDHKGGG LLQLVGVDFK  420
DDSSNFCSSI LNEEGTEVSA SDMHALKSDH EQKCESDEHV VENFPDETEP VMPQVKMTGN  480
ESQSTEQIGV PTAAVAIAIE ENGPLQCPEE QLPSDCCESS LQKSSVEHAT KVLPDMNPVA  540
AQVISEVMQT TNLVGADDAD DYENSKIRRC DIAESEDKRI TDKNSTENII ANETVTEEGY  600
STLGSMEGKV SVETPVSTTE SGENLQESNF TSENVINASK SNLSEYECLQ LSTVSDNQKC  660
VKELESNGNR KVQVEGGDKV SAAAESINVE DSDELQKSAD KVGDVELLRG PSDIINDVVL  720
QKSSEDGTKE PQLSPSDISS SIQNSATAGD NSAGDFVGVV SENQLESSPD EGESKSVAQQ  780
LGASVTDFSV DSGSQTDSLE GHWGSVSVLS TQSDMPAIVD AEASNGSKAS VKAEKADLTK  840
PKAFSEGQHS DKSDIFEPPS FTTLVEPRDG DKAAAAASSK IQTTQNPNQP AGWFPSLTHV  900
TNESQGRKKN EEIIAKVTNW SAGKQHTPLK NLLSEANIET KSKSLNAKEN LVVKKDESSS  960
KDNGASGPQV PISEPVKKEA GKEWNSPARY PTDIKGEKKK VKGRPSWAQF MCCASVN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G199100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612630.1	0.0	uncharacterized protein LOC110615188 isoform X1
TrEMBL	A0A2C9VY39	0.0	A0A2C9VY39_MANES; Uncharacterized protein
STRING	cassava4.1_000850m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19

Link Out ? help Back to Top
Phytozome	Manes.05G199100.1.p