PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G188800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18502.2 Da PI: 8.2146 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.5 | 1.1e-43 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Ca+C++lrr+C+kdCv+apyfp+++p kfa+vhk+FGasnv+k+l+a+p ++reda++slvyeA+ar++dPvyG+vg i+ lq+q++ql Manes.05G188800.1.p 6 PCASCRLLRRRCTKDCVFAPYFPSNEPCKFAIVHKVFGASNVSKMLQAIPAHQREDAARSLVYEANARVKDPVYGCVGAISILQNQVSQL 95 7***************************************************************************************** PP DUF260 91 kaelallkee 100 + +l+++++e Manes.05G188800.1.p 96 QMQLSEARAE 105 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.719 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-43 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MVGSSPCASC RLLRRRCTKD CVFAPYFPSN EPCKFAIVHK VFGASNVSKM LQAIPAHQRE 60 DAARSLVYEA NARVKDPVYG CVGAISILQN QVSQLQMQLS EARAEILCIQ MLEKPTIPNH 120 LNHDVKSSSV YPATNFNTFP QSHCFNFESP SNVIIQDPLK SESLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-47 | 4 | 121 | 9 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-47 | 4 | 121 | 9 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G188800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614105.1 | 1e-122 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 1e-68 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2C9VZ16 | 1e-120 | A0A2C9VZ16_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026605m | 1e-121 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 6e-71 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G188800.1.p |
Publications ? help Back to Top | |||
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