PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G184000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | AP2 | ||||||||
Protein Properties | Length: 659aa MW: 72497.4 Da PI: 7.0809 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 2e-12 | 305 | 361 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Manes.05G184000.1.p 305 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 361 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 43.7 | 6.8e-14 | 404 | 455 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t e+Aa+a++ a+ k++g Manes.05G184000.1.p 404 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEGAAEAYDVAAIKFRG 455 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-9 | 305 | 361 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-14 | 305 | 371 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.13E-19 | 305 | 369 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-13 | 306 | 370 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-23 | 306 | 375 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.57 | 306 | 369 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 307 | 318 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-9 | 404 | 455 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-16 | 404 | 464 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.10E-24 | 404 | 465 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 405 | 463 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-33 | 405 | 469 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.94 | 405 | 463 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 445 | 465 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MKSVNDNNNG SNNNWLGFSL SPHMKMEVAS DPQHHHHQYH HEPQAPSAVS SAVPTGFYLS 60 SSHFNSSGIC YGVGENVGFH SPLSVMPLKS DGSLCIMEAL NRSRPEGMVP SSSPKLEDFL 120 GGATMETQRY SSHEREAMTL SLDSMYYHQN SDLQFSVQNH PYYSGMACHG MYQPSLEEAT 180 KDAHFADCDS QIPQIANDEM PLLNNWVARQ YPTHNALEQQ LNSGMVDDGG ASVSVGPIGC 240 GDSQSLSLSM SPSSQSSCVT APIQISSPRG TECMAMETKK RGSAKVGQKQ TVHRKSIDTF 300 GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW 360 GPSAHINFPL ENYREELEEM KNMSRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA 420 RIGRVAGNKD LYLGTFSTQE GAAEAYDVAA IKFRGVNAVT NFDITRYDVE RIMASNTLLA 480 GELARRKIET ETSNGAIVYN PYAQTGGETI QLPTSHGNGS DWKMAFYESP QQPQSSACVD 540 SLDQKSTCVG NYRSSSFSMA TQDIMGIDSV NSCQPVMDES AARLGTHYSN NSSLVTSLSS 600 SREASPDKTG NTMLFSKPPL ASKLITSTNG AWFQTAAELR PSTTSMSHLP VFAAWNDT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G184000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612267.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-165 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2C9VXF6 | 0.0 | A0A2C9VXF6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003216m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-155 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G184000.1.p |