PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G183900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 596aa    MW: 64651.4 Da    PI: 7.1151
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G183900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC764e-24211255145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCsr++++++k+CErHl+rgr+rsrk++e 
  Manes.05G183900.1.p 211 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHLNRGRHRSRKHVEG 255
                          79****************************************986 PP
2QLQ59.68.9e-21141177137
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          ++FT++Q+++L++Q+l+yKy+ a++P+P++Ll +i+k
  Manes.05G183900.1.p 141 GPFTPSQWMELEHQALIYKYITAKVPIPSNLLNPIRK 177
                          59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-11141177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.312142177IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.6E-15142176IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.302211255IPR014977WRC domain
PfamPF088793.6E-20212254IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDFGAVGLEG LVGSVDNSAA LASFASSDRE TKQELYGSGF PKQERSGAAD DDWRSSKLPK  60
TTESLLLPQR NTSLKSQHQP QILSFSCPKS KALSVERSAQ NATFPGFHPT SSAYSRSTGY  120
NYGSFNDANI NMHGVFTESR GPFTPSQWME LEHQALIYKY ITAKVPIPSN LLNPIRKSLD  180
SAAFSGYSGG LLRPNTLSWG TFHLGFSSTT DPEPGRCRRT DGKKWRCSRD AVADQKYCER  240
HLNRGRHRSR KHVEGQSGHS AAAATTTTGK PMPTVSSSVS ASVVGLHGSG TSNSLGIAQH  300
QPQLKDLKPD SSTPSSRMFL NKEDMSERLQ ESPGLSVSEI GLKSKDLFFF SKQQNSYQDS  360
SQIEFGLVNS DSLLNPSQDS SSLFSSRNFC SSQDLTDQET MSQRGVHQFI EDWPKTQSDH  420
SAVSLPQFDV QIDRTQLSIS VPVAYTDLIP STSSTNNEDV SRSLQRLSHD LDSVHMGTGL  480
GIVLNEQNLR QANWISVPWE ITTGGPLGEV LHNTNNGISE CRNSSVLNLL AEGWDRSPQI  540
GSSPTGVLQK TTFCSLSNSS TGSSPRAENK RSNEGASLCN DLGSILVHPS SLPAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G183900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0422965e-71KF042296.1 Codiaeum variegatum GRF2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612143.10.0growth-regulating factor 6-like
TrEMBLA0A2C9VXI40.0A0A2C9VXI4_MANES; Uncharacterized protein
STRINGcassava4.1_004088m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.19e-82growth-regulating factor 1