PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G180800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22554.7 Da PI: 7.9835 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.5 | 5.7e-30 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++ Manes.05G180800.1.p 2 SCNGCRVLRKGCSETCILRSCLhwissPEAQGNATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWSGNW 91 6***************************************************************************************** PP DUF260 86 qleqlkaelal 96 +++++++e++l Manes.05G180800.1.p 92 HVCHAAVETVL 102 *****999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.447 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR SCLHWISSPE AQGNATLFLA KFFGRSDLMS LISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCHAAVET VLSGGILLPL SGIFAGVLAP 120 NYDELTDSFS AEACELSNMW TQSKPYGNIG RENQASVLND SLTPKLVTGR AGRVKRSRGA 180 ASFYTEESSE TTTVTSNDGD RKKLLKLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G180800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614049.1 | 1e-153 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 3e-64 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2C9VYR3 | 1e-152 | A0A2C9VYR3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016230m | 1e-153 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-60 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G180800.1.p |