PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G175800.1.p | ||||||||
Common Name | RAP2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 153aa MW: 17157.2 Da PI: 9.3917 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.6e-18 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Manes.05G175800.1.p 30 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 79 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.194 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-21 | 30 | 88 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-37 | 30 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 31 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-11 | 31 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-12 | 31 | 42 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.55E-27 | 31 | 89 | No hit | No description |
PRINTS | PR00367 | 6.7E-12 | 69 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MEGECCSSSS SASATTTAEK RKPRQQQDKP YRGIRMRKWG KWVAEIREPN KRSRIWLGSY 60 STPIAAARAY DTAVFYLRGP SARLNFPDLI YHEDNLRDMS AASIRKKATE VGAQVDALQQ 120 TALHASEKNP NRVVPEKPDL NQYPTPESSD EE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-15 | 27 | 87 | 2 | 63 | ATERF1 |
3gcc_A | 1e-15 | 27 | 87 | 2 | 63 | ATERF1 |
5wx9_A | 2e-15 | 31 | 96 | 15 | 77 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G175800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ807807 | 0.0 | JQ807807.1 Manihot esculenta ERF/AP2 domain-containing transcription factor (RAP2.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611505.1 | 1e-111 | ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q9SNE1 | 2e-51 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | V9M5D1 | 1e-109 | V9M5D1_MANES; ERF/AP2 domain-containing transcription factor | ||||
STRING | cassava4.1_033803m | 1e-110 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 4e-53 | cooperatively regulated by ethylene and jasmonate 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G175800.1.p |
Publications ? help Back to Top | |||
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