PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G175700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WOX | ||||||||
Protein Properties | Length: 213aa MW: 24375.5 Da PI: 9.497 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.7 | 1.5e-21 | 77 | 136 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Manes.05G175700.1.p 77 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgrygKIEGKNVFYWFQNHKARERQ 136 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 118.1 | 3.8e-38 | 77 | 138 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq Manes.05G175700.1.p 77 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGRYGKIEGKNVFYWFQNHKARERQKQ 138 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.203 | 72 | 137 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.41E-13 | 72 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.1E-7 | 74 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.85E-5 | 77 | 138 | No hit | No description |
Pfam | PF00046 | 2.8E-19 | 77 | 136 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-8 | 78 | 136 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGSMKVHQLS RGFWEHEPSL TLGCKRLRPL APKLANTDSI TSFDLKSFIR PESGPRKLGS 60 SDEKKDSPQV ETHAGGTRWN PTQEQIGILE MLYRGGMRTP NAQQIEQITA QLGRYGKIEG 120 KNVFYWFQNH KARERQKQKR NSLGRSHSPR TPGPITPISL DTREEVERDE DSPYKRKCRS 180 LAFECLELEE SRSCREEGDR TLELFPLHPE GR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G175700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612174.1 | 1e-156 | WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 2e-74 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A2C9VX88 | 1e-155 | A0A2C9VX88_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029129m | 1e-153 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6132 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 3e-72 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G175700.1.p |