PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G174800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 239aa    MW: 26190 Da    PI: 9.1704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G174800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-08159199954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Manes.05G174800.1.p 159 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 199
                          599*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.59E-12149204No hitNo description
PROSITE profilePS5088815.193150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14154209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-14156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6160199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDVDQLKSAT EDQMQMMMMD KLPEFYGACH EVVDLALPPE FAGATTATTT DCAGSDAILN  60
FINNPRISSL PSFTAIPFQE DSPPPAFPSN PSTARCRAAG EFSGPKSYST PSQKNSMAAM  120
REMIFRMAVM QPIHIDPESV KPPKRRNVKV SKDPQTVAAR HRRERISEKI RILQRLVPGG  180
TKMDTASMLD EAIHYVKFLK NQVQSLERVQ ANSSSTGIGF PVAMSSGSFL SKGKTYLQ*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G174800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611466.11e-178transcription factor HEC2-like
SwissprotQ9SND48e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2C9VYK01e-176A0A2C9VYK0_MANES; Uncharacterized protein
STRINGcassava4.1_030197m1e-177(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.15e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]