PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G168900.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 599aa    MW: 66723.3 Da    PI: 8.7099
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G168900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.5e-1817106198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ff ++  s++l+s+rl++p  f+++++g    s  ++l+ +sg++W  +l  +++++ ++l  GW  Fvk++ ++ gD+++F++dg+ +f
  Manes.05G168900.4.p  17 FFEIF--SSNLTSDRLRIPVGFTKHMEGR--ISGLVSLTGPSGNVWHAYL--TQQDNDVFLDHGWPTFVKDHLIECGDVLIFRYDGELCF 100
                          56666..9***************777766..6669***************..*********************************99888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v+vf+
  Manes.05G168900.4.p 101 --SVQVFD 106
                          ..888886 PP
2B345.31.6e-14264353294
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          + ++++ +v+ s  l +p +f ++h   ++++++++l++ +g  W+v+    ++   ++++ +GW  Fv++n++k gD+++F+l+++ e 
  Manes.05G168900.4.p 264 VRIMKRFNVSGSYTLNIPYQFSTAHL--PNCKTEIVLRTVKGACWSVNSVPtTRVHTSHTFCGGWMAFVRSNDIKIGDVCIFELVRKCEL 351
                          56667778888899********9996..45889***************954566666799999********************9985444 PP

                          ..EE CS
                   B3  91 elvv 94 
                            +v
  Manes.05G168900.4.p 352 --RV 353
                          ..44 PP
3B346.75.5e-155065861396
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          s  l +p +f ++h   ++++++++l++++g  W+v+   + k++r +++ +GW  Fv++n ++ gD+++F+l+++   e++v++
  Manes.05G168900.4.p 506 SYTLKIPHQFSAAHL--PNCKTEIVLRNSQGICWTVNAVPDSKGRRiHTFCGGWMAFVRDNYINMGDVCIFELVSK--CEMLVHI 586
                          45699******9996..45889****************776666667*************************9873..3356666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2110110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2211110IPR015300DNA-binding pseudobarrel domain
CDDcd100174.03E-1715106No hitNo description
PROSITE profilePS5086313.29615108IPR003340B3 DNA binding domain
SMARTSM010191.5E-1117108IPR003340B3 DNA binding domain
PfamPF023621.7E-1517106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-21258357IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22260358IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-18261357No hitNo description
PROSITE profilePS5086312.929263359IPR003340B3 DNA binding domain
SMARTSM010193.2E-12263359IPR003340B3 DNA binding domain
PfamPF023627.5E-12263353IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-21485587IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-22487588IPR015300DNA-binding pseudobarrel domain
CDDcd100179.18E-17492586No hitNo description
SMARTSM010191.7E-10494590IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407494590IPR003340B3 DNA binding domain
PfamPF023626.0E-12503586IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MEKQNQAEMV NTSRPCFFEI FSSNLTSDRL RIPVGFTKHM EGRISGLVSL TGPSGNVWHA  60
YLTQQDNDVF LDHGWPTFVK DHLIECGDVL IFRYDGELCF SVQVFDISAC EKEAAFHSKC  120
SQDPSQLYKS IGQKREREER AASSDKNCEY VLKKVRGDSS ELYSEHINKS LGAGLVISNK  180
EGCQLEEVNT TKKCPEESSS HEKCYSPCPI SVIPPQSKPC YQSSDVQKRI GKEDDLPDRG  240
CGSVLLQREK RVAQSFISCF PYFVRIMKRF NVSGSYTLNI PYQFSTAHLP NCKTEIVLRT  300
VKGACWSVNS VPTTRVHTSH TFCGGWMAFV RSNDIKIGDV CIFELVRKCE LRVFILRVGK  360
EVLEKQSGEV ASNEATVGCT ATAHKSDIFP KKSRKNALKV HSRPITKVEM CDKKDSNKSQ  420
VASNHARKCS NAIKSSASAM LCSQSRAVNE KLDVAINSGK NLDVSSHDGV GGRVMLALHE  480
EKAAKSFNSR FPNFVRIMRK FNISGSYTLK IPHQFSAAHL PNCKTEIVLR NSQGICWTVN  540
AVPDSKGRRI HTFCGGWMAF VRDNYINMGD VCIFELVSKC EMLVHISGVG GKTLQPPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G168900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613086.10.0B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A251KYL80.0A0A251KYL8_MANES; Uncharacterized protein
STRINGcassava4.1_004019m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-26B3 family protein