PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G168900.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 601aa    MW: 66923.5 Da    PI: 8.6529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G168900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.6e-1817106198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ff ++  s++l+s+rl++p  f+++++g    s  ++l+ +sg++W  +l  +++++ ++l  GW  Fvk++ ++ gD+++F++dg+ +f
  Manes.05G168900.2.p  17 FFEIF--SSNLTSDRLRIPVGFTKHMEGR--ISGLVSLTGPSGNVWHAYL--TQQDNDVFLDHGWPTFVKDHLIECGDVLIFRYDGELCF 100
                          56666..9***************777766..6669***************..*********************************99888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v+vf+
  Manes.05G168900.2.p 101 --SVQVFD 106
                          ..888886 PP
2B345.31.6e-14266355294
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          + ++++ +v+ s  l +p +f ++h   ++++++++l++ +g  W+v+    ++   ++++ +GW  Fv++n++k gD+++F+l+++ e 
  Manes.05G168900.2.p 266 VRIMKRFNVSGSYTLNIPYQFSTAHL--PNCKTEIVLRTVKGACWSVNSVPtTRVHTSHTFCGGWMAFVRSNDIKIGDVCIFELVRKCEL 353
                          56667778888899********9996..45889***************954566666799999********************9985444 PP

                          ..EE CS
                   B3  91 elvv 94 
                            +v
  Manes.05G168900.2.p 354 --RV 355
                          ..44 PP
3B346.75.6e-155085881396
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          s  l +p +f ++h   ++++++++l++++g  W+v+   + k++r +++ +GW  Fv++n ++ gD+++F+l+++   e++v++
  Manes.05G168900.2.p 508 SYTLKIPHQFSAAHL--PNCKTEIVLRNSQGICWTVNAVPDSKGRRiHTFCGGWMAFVRDNYINMGDVCIFELVSK--CEMLVHI 588
                          45699******9996..45889****************776666667*************************9873..3356666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-2110110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2211110IPR015300DNA-binding pseudobarrel domain
CDDcd100173.48E-1715106No hitNo description
PROSITE profilePS5086313.29615108IPR003340B3 DNA binding domain
SMARTSM010191.5E-1117108IPR003340B3 DNA binding domain
PfamPF023621.7E-1517106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-21260359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22262360IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-18263359No hitNo description
SMARTSM010193.2E-12265361IPR003340B3 DNA binding domain
PfamPF023627.5E-12265355IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929265361IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-21487589IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-22489590IPR015300DNA-binding pseudobarrel domain
CDDcd100178.00E-17494588No hitNo description
SMARTSM010191.7E-10496592IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407496592IPR003340B3 DNA binding domain
PfamPF023626.0E-12505588IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MEKQNQAEMV NTSRPCFFEI FSSNLTSDRL RIPVGFTKHM EGRISGLVSL TGPSGNVWHA  60
YLTQQDNDVF LDHGWPTFVK DHLIECGDVL IFRYDGELCF SVQVFDISAC EKEAAFHSKC  120
SQDPSQLYKS IGQKREREER AASSDKNCEY VLKKVRGDSS ELYSEHINKS LGAGLVISNK  180
EGCQLEEVNT TKKCPEESSS HEKCYSPCPI SVIPPQSKPC YQSSEADVQK RIGKEDDLPD  240
RGCGSVLLQR EKRVAQSFIS CFPYFVRIMK RFNVSGSYTL NIPYQFSTAH LPNCKTEIVL  300
RTVKGACWSV NSVPTTRVHT SHTFCGGWMA FVRSNDIKIG DVCIFELVRK CELRVFILRV  360
GKEVLEKQSG EVASNEATVG CTATAHKSDI FPKKSRKNAL KVHSRPITKV EMCDKKDSNK  420
SQVASNHARK CSNAIKSSAS AMLCSQSRAV NEKLDVAINS GKNLDVSSHD GVGGRVMLAL  480
HEEKAAKSFN SRFPNFVRIM RKFNISGSYT LKIPHQFSAA HLPNCKTEIV LRNSQGICWT  540
VNAVPDSKGR RIHTFCGGWM AFVRDNYINM GDVCIFELVS KCEMLVHISG VGGKTLQPPS  600
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G168900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613086.10.0B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A251LDA00.0A0A251LDA0_MANES; Uncharacterized protein
STRINGcassava4.1_004019m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-26B3 family protein