PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G168900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 601aa MW: 66923.5 Da PI: 8.6529 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.1 | 6.6e-18 | 17 | 106 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ff ++ s++l+s+rl++p f+++++g s ++l+ +sg++W +l +++++ ++l GW Fvk++ ++ gD+++F++dg+ +f Manes.05G168900.1.p 17 FFEIF--SSNLTSDRLRIPVGFTKHMEGR--ISGLVSLTGPSGNVWHAYL--TQQDNDVFLDHGWPTFVKDHLIECGDVLIFRYDGELCF 100 56666..9***************777766..6669***************..*********************************99888 PP ..EEEEE- CS B3 91 elvvkvfr 98 v+vf+ Manes.05G168900.1.p 101 --SVQVFD 106 ..888886 PP | |||||||
2 | B3 | 45.3 | 1.6e-14 | 266 | 355 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + ++++ +v+ s l +p +f ++h ++++++++l++ +g W+v+ ++ ++++ +GW Fv++n++k gD+++F+l+++ e Manes.05G168900.1.p 266 VRIMKRFNVSGSYTLNIPYQFSTAHL--PNCKTEIVLRTVKGACWSVNSVPtTRVHTSHTFCGGWMAFVRSNDIKIGDVCIFELVRKCEL 353 56667778888899********9996..45889***************954566666799999********************9985444 PP ..EE CS B3 91 elvv 94 +v Manes.05G168900.1.p 354 --RV 355 ..44 PP | |||||||
3 | B3 | 46.7 | 5.6e-15 | 508 | 588 | 13 | 96 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 s l +p +f ++h ++++++++l++++g W+v+ + k++r +++ +GW Fv++n ++ gD+++F+l+++ e++v++ Manes.05G168900.1.p 508 SYTLKIPHQFSAAHL--PNCKTEIVLRNSQGICWTVNAVPDSKGRRiHTFCGGWMAFVRDNYINMGDVCIFELVSK--CEMLVHI 588 45699******9996..45889****************776666667*************************9873..3356666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-21 | 10 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-22 | 11 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.48E-17 | 15 | 106 | No hit | No description |
PROSITE profile | PS50863 | 13.296 | 15 | 108 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-11 | 17 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-15 | 17 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-21 | 260 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-22 | 262 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.27E-18 | 263 | 359 | No hit | No description |
SMART | SM01019 | 3.2E-12 | 265 | 361 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-12 | 265 | 355 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.929 | 265 | 361 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-21 | 487 | 589 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-22 | 489 | 590 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.00E-17 | 494 | 588 | No hit | No description |
SMART | SM01019 | 1.7E-10 | 496 | 592 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.407 | 496 | 592 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-12 | 505 | 588 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MEKQNQAEMV NTSRPCFFEI FSSNLTSDRL RIPVGFTKHM EGRISGLVSL TGPSGNVWHA 60 YLTQQDNDVF LDHGWPTFVK DHLIECGDVL IFRYDGELCF SVQVFDISAC EKEAAFHSKC 120 SQDPSQLYKS IGQKREREER AASSDKNCEY VLKKVRGDSS ELYSEHINKS LGAGLVISNK 180 EGCQLEEVNT TKKCPEESSS HEKCYSPCPI SVIPPQSKPC YQSSEADVQK RIGKEDDLPD 240 RGCGSVLLQR EKRVAQSFIS CFPYFVRIMK RFNVSGSYTL NIPYQFSTAH LPNCKTEIVL 300 RTVKGACWSV NSVPTTRVHT SHTFCGGWMA FVRSNDIKIG DVCIFELVRK CELRVFILRV 360 GKEVLEKQSG EVASNEATVG CTATAHKSDI FPKKSRKNAL KVHSRPITKV EMCDKKDSNK 420 SQVASNHARK CSNAIKSSAS AMLCSQSRAV NEKLDVAINS GKNLDVSSHD GVGGRVMLAL 480 HEEKAAKSFN SRFPNFVRIM RKFNISGSYT LKIPHQFSAA HLPNCKTEIV LRNSQGICWT 540 VNAVPDSKGR RIHTFCGGWM AFVRDNYINM GDVCIFELVS KCEMLVHISG VGGKTLQPPS 600 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G168900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021613086.1 | 0.0 | B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
TrEMBL | A0A251LDA0 | 0.0 | A0A251LDA0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_004019m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G168900.1.p |