PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G158500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 306aa    MW: 34413.2 Da    PI: 6.8828
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G158500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.17.8e-3278135260
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                          ++vrY+eCl+NhAas+Gg+++DGCgEfmp  g+egt +alkCaAC+CHRnFHR+ev+ e
  Manes.05G158500.1.p  78 ANVRYRECLRNHAASVGGNVYDGCGEFMPG-GKEGTLEALKCAACQCHRNFHRKEVDGE 135
                          589**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.9E-2979132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2280133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-2881132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.182131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.38E-18214282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-29220282IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-29221278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MELRGQDMND TRTSSVPSSY GHESSGVERR RDGNHNGNSV LTYTQTLDHH KQPSLPQTRS  60
PNPDRVSVIA KGSNSKTANV RYRECLRNHA ASVGGNVYDG CGEFMPGGKE GTLEALKCAA  120
CQCHRNFHRK EVDGETQFSP SSRRSTMVHS LQLPPPLPSP TVLHHQRYSM GLHTSPTSAN  180
MVQPMSVAFA GGGTESSSED LNIFHSNAEG GPTPPPFVLS KKRFRTKFTQ EQKDKMMEFA  240
EKIGWRINKQ EEEEVEKFCA EVGVRRKVFK VWMHNNKNPK KQQEQHQQQP PEEEEEEEEE  300
EEEPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-242202781674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G158500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612563.10.0zinc-finger homeodomain protein 5-like
SwissprotQ9FRL52e-67ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A2C9VWP70.0A0A2C9VWP7_MANES; Uncharacterized protein
STRINGcassava4.1_022551m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.12e-65homeobox protein 33