PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G153700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 234aa    MW: 25773 Da    PI: 5.1337
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G153700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-194190255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  Manes.05G153700.1.p 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 90
                         69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.39E-2240100No hitNo description
PROSITE profilePS5103222.6294198IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-224198IPR016177DNA-binding domain
PfamPF008473.0E-144190IPR001471AP2/ERF domain
SMARTSM003809.8E-3741104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-304199IPR001471AP2/ERF domain
PRINTSPR003676.7E-104253IPR001471AP2/ERF domain
PRINTSPR003676.7E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSKSITTPSL VEKKQLRKPA QASSRKGCMR GKGGPENALC TYKGVRQRTW GKWVAEIREP  60
NRGARLWLGT FDTSHEAAMA YDAAARKLYG PDAKLNLPEL HLNNNRFPAP SGHTQVSQVY  120
MGNESQLLDD SDATCSSSNP IIRSSEMKST YFRKSIMSFA DENVEPDDKV AENEGNIDEL  180
WANLNVNLPL FDDSIWAEAA MSIDFPAIDN PGIIGGNLME GTGWDALQTP WCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-174298360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G153700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119662e-89AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611428.11e-175dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2C9VWJ91e-174A0A2C9VWJ9_MANES; Uncharacterized protein
STRINGcassava4.1_026885m1e-175(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-55ERF family protein