PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G153200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | SRS | ||||||||
Protein Properties | Length: 303aa MW: 33398.8 Da PI: 6.4974 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 230.7 | 2.5e-71 | 89 | 239 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsst 89 g+++CqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpa+krrerqqql+++++++++++ + +++kr+re+ + + +l++t Manes.05G153200.1.p 89 GGMNCQDCGNQAKKDCVHMRCRTCCKSRGFPCQTHVKSTWVPASKRRERQQQLSSLQEQQQQQQqqqfRGENPKRQREN-QGDAPSLACT 177 789****************************************************998888777444444455555544.4445555666 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +l a++++ le++++P+ev+s+avfrcvrvs +d+ +e++aYqtav+igGhvfkGiLydqG++ Manes.05G153200.1.p 178 RL--ATTTTGLEIEHFPPEVNSPAVFRCVRVSPMDEPDEQYAYQTAVNIGGHVFKGILYDQGPD 239 65..555677999*************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.4E-69 | 90 | 239 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.0E-27 | 92 | 134 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 6.1E-26 | 190 | 238 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAGWFYLSGR EGASSKVQEE NKDPENNFFL YRSNEEIDNK GFEIWQQDYQ QQQNMNSYSS 60 YGVGLSRISL SDESSRSGFM VMRQSGVGGG MNCQDCGNQA KKDCVHMRCR TCCKSRGFPC 120 QTHVKSTWVP ASKRRERQQQ LSSLQEQQQQ QQQQQFRGEN PKRQRENQGD APSLACTRLA 180 TTTTGLEIEH FPPEVNSPAV FRCVRVSPMD EPDEQYAYQT AVNIGGHVFK GILYDQGPDG 240 RYTSGGESSS GGGQQLNFMT AATTSAAATT TNANNPGAGA LLDPSLYPAP FNAFIAVLTC 300 NQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G153200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011966 | 1e-124 | AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612339.1 | 0.0 | protein SHI RELATED SEQUENCE 5-like isoform X2 | ||||
Swissprot | Q9LQZ5 | 1e-83 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2C9VWI9 | 0.0 | A0A2C9VWI9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021201m | 1e-179 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 1e-65 | SHI-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G153200.1.p |
Publications ? help Back to Top | |||
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