PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G153000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 180aa MW: 21128.3 Da PI: 10.2804 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93 | 1.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fs++gkl+ey+s Manes.05G153000.2.p 9 KRIENSTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSTSGKLHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 93.5 | 3.5e-31 | 71 | 170 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 yqk+ g++ +++++e++q+ l+kLk+ + nL+re+R+++Ge+L+++s+++L+ Leq+++++l+ iR++Kn+++ +qi ++ kk ++++e Manes.05G153000.2.p 71 YQKTLGVDIWSSQYEKMQETLKKLKEANMNLRREIRKRMGECLNDMSFEDLRGLEQDMDTALNVIRERKNRVIANQIVTSTKKLRNVEEV 160 78999999********************************************************************************** PP K-box 91 nkaLrkklee 100 +++L ++++e Manes.05G153000.2.p 161 HRNLLHEYQE 170 ****999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.113 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.66E-38 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.14E-36 | 3 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.0E-21 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.102 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MARGKIQIKR IENSTNRQVT YSKRRNGLFK KANELTVLCD ARVSIIMFST SGKLHEYISP 60 STTTKQVFDQ YQKTLGVDIW SSQYEKMQET LKKLKEANMN LRREIRKRMG ECLNDMSFED 120 LRGLEQDMDT ALNVIRERKN RVIANQIVTS TKKLRNVEEV HRNLLHEYQE QEMKIHTMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G153000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612346.1 | 1e-121 | floral homeotic protein DEFICIENS | ||||
Swissprot | E0CPH4 | 1e-90 | AP3_VITVI; Agamous-like MADS-box protein AP3 | ||||
TrEMBL | A0A2C9VWL6 | 1e-130 | A0A2C9VWL6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015343m | 1e-120 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-76 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G153000.2.p |
Publications ? help Back to Top | |||
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