PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G137600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | CO-like | ||||||||
Protein Properties | Length: 436aa MW: 48714.6 Da PI: 4.9874 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 32.2 | 2.2e-10 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ +++k++++fC +++ +lC+ C ++ H+ H++v Manes.05G137600.1.p 16 ARPCDGCSRKRARWFCASDDAFLCQACDESVHSAnqlasrHERV 59 678*****************************667888888876 PP | |||||||
2 | CCT | 68.7 | 1.5e-23 | 380 | 422 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ Manes.05G137600.1.p 380 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 422 9****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.0E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.249 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-8 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.09E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.003 | 380 | 422 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.5E-18 | 380 | 422 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MITGRKAANA LAGKTARPCD GCSRKRARWF CASDDAFLCQ ACDESVHSAN QLASRHERVR 60 LETASSKISG SMNTVVSPPW LQGFTKKART PRHNNSTKSL LSNQRFKDEE KVLMNYLPLV 120 PEIGSEEEGN TVADEDEDQL LYRVPVFDPF AAELCTDDVI MCEGTEIAMG NEEGNMVFDG 180 CGEEGSTCDL DNLPGFLPSD MDLAEFAADV ENLLGRGPED DSSDIKELGL LDCKEENDDK 240 FCLDDKVVKV KDEQELEAIT DCHFDQAFDI ARESFDWNFN YKSPITGDEE EEEKVAPALT 300 DTTTMNSGKS KEMRRNVTLR LNYEAVIKAW ASHGSPWTTG SRPELNPDDC WPDCMGTCPN 360 AHHHTYGVLG GHTGGGNGGR EARVLRYKEK RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV 420 KRMSFMGTAF PCINK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 390 | 406 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G137600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612043.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A2C9VXF3 | 0.0 | A0A2C9VXF3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_007940m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 4e-87 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G137600.1.p |