PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G123700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TCP | ||||||||
Protein Properties | Length: 74aa MW: 8314.64 Da PI: 10.856 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 77.9 | 2.8e-24 | 27 | 73 | 2 | 48 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdskti 48 a+k++++++ hTkv+gR+RR R++a+caar+F+L++eLG+++d+kti Manes.05G123700.1.p 27 APKRSSNKDKHTKVEGRGRRLRMPALCAARIFQLTRELGHKSDGKTI 73 789*******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.1E-19 | 32 | 73 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 19.963 | 33 | 73 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MGENKPAEIK DFQIVIADKE DQKKQLAPKR SSNKDKHTKV EGRGRRLRMP ALCAARIFQL 60 TRELGHKSDG KTI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G123700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209004 | 1e-60 | AC209004.1 Populus trichocarpa clone POP042-E15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609531.1 | 4e-44 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 3e-30 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2C9VVN3 | 4e-46 | A0A2C9VVN3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012485m | 4e-43 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-32 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G123700.1.p |