PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G119300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 373aa    MW: 42181.4 Da    PI: 8.1597
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G119300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.51.4e-391242793133
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec...... 73 
                           k+drhskihT++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl qa paik+l ++             s+ss sec      
  Manes.05G119300.1.p 124 SKRDRHSKIHTAQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLIQARPAIKKLSSDlpklncsfsdgtkSASSTSECevasgi 213
                          69*******************************************************************999976655555666444432 PP

                  TCP  74 .eaesssssasnsssg..............kaaksaakskksqksaasalnlakesr.akarararertrekmrik 133
                           +  +          +               ++ +++ +k +q++++++  l +esr +karararertrek   +
  Manes.05G119300.1.p 214 dD--EAA--------AmkatskisnakgssLSCVNNKGKKAKQSRKTAFDPLERESRrEKARARARERTREKLWSR 279
                          21..111........1222333445666666677777555555555557888886655**************8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-43124275IPR005333Transcription factor, TCP
PROSITE profilePS5136932.568125183IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.324257275IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MFLSSNNGND PIYYSEQQEG YYRPFFNDNI TPISKHEESP FSFFHSSSPF LPYDQLELQD  60
HDVFLHQSHD LLLQHHQPLI RTLASTTGAA PAEAILGMVD SNKNDAIKKS HNVSSDQIPR  120
KRSSKRDRHS KIHTAQGPRD RRMRLSLKVA REFFDLQDKL CFDKASKTVE WLLIQARPAI  180
KKLSSDLPKL NCSFSDGTKS ASSTSECEVA SGIDDEAAAM KATSKISNAK GSSLSCVNNK  240
GKKAKQSRKT AFDPLERESR REKARARARE RTREKLWSRR IDESKLCEEE KSHELNRLTC  300
WSPFETGEES GTLTHTMYPN SLEMLAHEVQ PPSSHVQDPL VATEAMIDDS FVIMGKWSPY  360
SSIINLYNTV MP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G119300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612468.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A2C9VVH80.0A0A2C9VVH8_MANES; Uncharacterized protein
STRINGcassava4.1_032286m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-22TCP family protein