PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G112000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 213aa    MW: 23941.6 Da    PI: 10.1815
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G112000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.13.6e-161967149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k+ien+  + +tfskRr gi KKA+EL +L+++e a ++fs+ gk + +
  Manes.05G112000.1.p 19 KKIENEDGKLITFSKRRSGIYKKASELITLTGTELAFVVFSPAGKPFSF 67
                         68******************************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.9E-231170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.1471171IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-231285IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-161333IPR002100Transcription factor, MADS-box
PfamPF003191.8E-192067IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-163348IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-164869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MATDMQGKKT KGKQKIEMKK IENEDGKLIT FSKRRSGIYK KASELITLTG TELAFVVFSP  60
AGKPFSFAHP SVDEVTNKFL GKQPQANTQG STHPLIEAHR QARIEELNRQ NNEFLHQLDL  120
IKEKGKQLKL RMTGKEKKGW WDSPIEEMNI QQILDAEVSC EEIRSRLINK FMIKTSGGAS  180
SSAVHHQSQM MIPFPPMGAN VINPPVFPPD FH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G112000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612894.11e-157agamous-like MADS-box protein AGL62
TrEMBLA0A2C9VVB81e-156A0A2C9VVB8_MANES; Uncharacterized protein
STRINGcassava4.1_022983m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-39AGAMOUS-like 62