PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G111900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28349.4 Da    PI: 8.4548
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G111900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF978.1e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         kri+nk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Manes.05G111900.1.p  9 KRIDNKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSQKGKLFEYST 59
                         79***********************************************96 PP
2K-box110.71.6e-36761742100
                K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                          ++++  s++ + +e+++ e+++Lk+++e Lqr++Rh++Ged+esLslkeLq+LeqqL+++lk+iR++Kn+l++e+i+elqkkek++qe+n
  Manes.05G111900.1.p  76 AERQIISTDLNSQENWTLEYNRLKAKVELLQRNHRHYMGEDIESLSLKELQNLEQQLDTALKHIRARKNQLMYESISELQKKEKAIQEQN 165
                          5566677777889***************************************************************************** PP

                K-box  92 kaLrkklee 100
                           +L+k+++e
  Manes.05G111900.1.p 166 SMLTKQIKE 174
                          ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.015161IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-34292IPR002100Transcription factor, MADS-box
CDDcd002659.37E-41279No hitNo description
PRINTSPR004041.4E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-3086172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.8288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGRVQLKR IDNKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSQ KGKLFEYSTD  60
SCMEKILERY ERYSYAERQI ISTDLNSQEN WTLEYNRLKA KVELLQRNHR HYMGEDIESL  120
SLKELQNLEQ QLDTALKHIR ARKNQLMYES ISELQKKEKA IQEQNSMLTK QIKEKEKAVA  180
QQALWEQHNH GTNMSPFLLP QPPLPCLNIG VNYQEEAPEV RRNELDLTLE PLYSCHLGCF  240
TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-22185184MEF2 CHIMERA
6byy_B3e-22185184MEF2 CHIMERA
6byy_C3e-22185184MEF2 CHIMERA
6byy_D3e-22185184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G111900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614064.11e-180truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-144AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2C9VV721e-179A0A2C9VV72_MANES; Uncharacterized protein
STRINGcassava4.1_029935m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-122MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]