PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G111000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family YABBY
Protein Properties Length: 179aa    MW: 19575.4 Da    PI: 9.3897
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G111000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY59.51.4e-181054246
                YABBY  2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46
                         +++  se++Cyv+CnfCnt+lav +P + l+++vtv+CGhC++l 
  Manes.05G111000.1.p 10 ELVPPSEHLCYVRCNFCNTVLAVGIPCKRLLETVTVKCGHCSNLS 54
                         67789*************************************985 PP
2YABBY99.85.9e-318415295163
                YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                          + ss++ s++++  +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafs+aaknWa +
  Manes.05G111000.1.p  84 QSSSSSSSTSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARY 152
                          44455557778888999999***********************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.1E-5514152IPR006780YABBY protein
SuperFamilySSF470951.22E-896150IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.8E-5106151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MNLEEKVSME LVPPSEHLCY VRCNFCNTVL AVGIPCKRLL ETVTVKCGHC SNLSFLSTRP  60
PFQGQCLDHQ FTLQGFFSDL RMGQSSSSSS STSSEPLSPK APFVVKPPEK KHRLPSAYNR  120
FMKEEIQRIK AANPEIPHRE AFSTAAKNWA RYIPNSAAGS VSGSSNSVSK KSPPLSLS*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G111000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067816.11e-108protein CRABS CLAW isoform X4
SwissprotQ76EJ04e-66YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A2C9VVA61e-127A0A2C9VVA6_MANES; Uncharacterized protein
STRINGcassava4.1_022631m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.16e-62YABBY family protein