PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G103700.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 360aa    MW: 40419.7 Da    PI: 8.4513
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G103700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF626.7e-201154245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         + en   rq t+ kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  Manes.05G103700.2.p 11 KLENINGRQATYGKRKHGIMKKAKELSILCDIDIILLMFSPTGK 54
                         5688899***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.114254IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-26261IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-24395IPR002100Transcription factor, MADS-box
CDDcd002666.46E-23382No hitNo description
PRINTSPR004042.1E-15424IPR002100Transcription factor, MADS-box
PfamPF003193.9E-171355IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-152439IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-153960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MMGRVKLKIK KLENINGRQA TYGKRKHGIM KKAKELSILC DIDIILLMFS PTGKPSICKG  60
KRSIEEVIAK FAQLTPQERA KRKLEGLEAL KKTFKKLDHD VNIPEFLGSS SQTIEDLSNQ  120
SRLLQNQLSE VHKRLSYWSN PNKINNIEHL GQLENSLRES LNQLRAHKDY LGKQQFMSLE  180
CNNQFQNGMH VPFRIGTDQQ LPPMPWIPNN DSQQIVLPED PNLLPHRDVE CSASSSFGSY  240
SGYFGTGKSS EISNSSQENG VNGLFNELNG TASLRLQLAG QYPYLPNNLN LLNDAKFQPA  300
SEMNIQESPV DFHVNGSFEA PKPGYDTNPG SWASSSGPCA VTMFDERFYS REFNMSNFA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G103700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613969.10.0agamous-like MADS-box protein AGL30 isoform X4
SwissprotQ1PFA41e-118AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A2C9VUY70.0A0A2C9VUY7_MANES; Uncharacterized protein
STRINGcassava4.1_025309m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.25e-82AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]