PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G103300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 445aa    MW: 48896.1 Da    PI: 6.506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G103300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-16132177147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Manes.05G103300.1.p 132 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 177
                          899*****************************.***********996 PP
2Myb_DNA-binding57.23.8e-18184227146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Manes.05G103300.1.p 184 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 227
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201127178IPR017930Myb domain
SMARTSM007173.3E-14131180IPR001005SANT/Myb domain
PfamPF002497.7E-16132177IPR001005SANT/Myb domain
SuperFamilySSF466893.48E-28132225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25133185IPR009057Homeodomain-like
CDDcd001674.26E-13135176No hitNo description
PROSITE profilePS5129427.592179233IPR017930Myb domain
SMARTSM007178.2E-15183231IPR001005SANT/Myb domain
PfamPF002496.0E-15184226IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-21186232IPR009057Homeodomain-like
CDDcd001675.20E-12186226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MASKCVIYSP SENNPICYSS SPCSSSSHCS SAGMVLADIG SLSLSPNYGV IPPASSSHEL  60
EIERSSWVFP FTGSHQSGDV VLEGKGSDCS DAFGENNDTA NRNANSIDEN PNNENMNSGK  120
ETDSGQSKLC ARGHWRPAED TKLKELVALY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP  180
RINRRAFTEE EEERLMQAHR LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKYREQSSAY  240
RRRKLSQSIY RRSEETSSFV CTDPGSKAEP PPYCLNIPNA GGLTSLSPYP IGTFNAGVDY  300
GLNGSPHMTS GGEAASSIQV QVQVPLTGFC AQQTPFEFFP GSKSNDVMGM FSHSRSWDRP  360
SDEPHISGFY PQLHDSYIMA MQQSNYQNPY YFSADSKAST PPQVSATEPS PSPSPSPSVA  420
ENTRTGHFET IPPPFIDFLG VGAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-341322327107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G103300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346337e-85KM034633.1 Jatropha curcas clone JcMYB012 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612524.10.0transcription factor MYB119-like
TrEMBLA0A251LAX40.0A0A251LAX4_MANES; Uncharacterized protein
STRINGcassava4.1_032253m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-80myb domain protein 105