PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G103100.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 493aa    MW: 53485 Da    PI: 6.9533
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G103100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.2e-39137196261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s
  Manes.05G103100.2.p 137 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSS 196
                          7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-30130194IPR003851Zinc finger, Dof-type
PfamPF027012.7E-32139195IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.947141195IPR003851Zinc finger, Dof-type
PROSITE patternPS013610143179IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSDLKDSAIK LFGKTIPLPL VHRLDLSSAN ESSSTAGPAS EDFPDENTAS SLENISGREE  60
GAQEINRVRE FAGKETSDDE QENSTSNHVT EDSKDPTMLS DVNEKPKTSS ENSPQKSSKN  120
GEQCDTTISQ EKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKNKSSCGSH YRHIMVSEAL RTAQVHAVNG FHNPTLRNSG TVLSFGSDSP  240
LCESVASVLN LSEKTQNNIR NGYHRPEQRI LISSGGACDN GDDRLSGSSV TASNSSDKGG  300
NCGPQEAITK NYQLQCFAVP PWSYPWSSSM APTAFYPSGF PVSFYPAPPH WGCSVPSPWN  360
GPPCLSVQLP SLTHCAASSS PTSPLGKHSR EGKILNPAHL ESEDPSRESN CSEISVLIPK  420
TLRIDDPSEA ARSSIWTTLG IKSSDKSNVN GGGLFKGFQS KNEDNNYVAE TSPLLHANPA  480
ALSRSLNFQE RT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G103100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4283926e-64AM428392.2 Vitis vinifera contig VV78X017201.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611540.10.0cyclic dof factor 3-like isoform X1
TrEMBLA0A251KVI70.0A0A251KVI7_MANES; Uncharacterized protein
STRINGcassava4.1_030452m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-94cycling DOF factor 2