PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G103100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Dof | ||||||||
Protein Properties | Length: 493aa MW: 53485 Da PI: 6.9533 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.2 | 4.2e-39 | 137 | 196 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Manes.05G103100.1.p 137 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSS 196 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 130 | 194 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-32 | 139 | 195 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.947 | 141 | 195 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 143 | 179 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MSDLKDSAIK LFGKTIPLPL VHRLDLSSAN ESSSTAGPAS EDFPDENTAS SLENISGREE 60 GAQEINRVRE FAGKETSDDE QENSTSNHVT EDSKDPTMLS DVNEKPKTSS ENSPQKSSKN 120 GEQCDTTISQ EKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT 180 MRNVPVGAGR RKNKSSCGSH YRHIMVSEAL RTAQVHAVNG FHNPTLRNSG TVLSFGSDSP 240 LCESVASVLN LSEKTQNNIR NGYHRPEQRI LISSGGACDN GDDRLSGSSV TASNSSDKGG 300 NCGPQEAITK NYQLQCFAVP PWSYPWSSSM APTAFYPSGF PVSFYPAPPH WGCSVPSPWN 360 GPPCLSVQLP SLTHCAASSS PTSPLGKHSR EGKILNPAHL ESEDPSRESN CSEISVLIPK 420 TLRIDDPSEA ARSSIWTTLG IKSSDKSNVN GGGLFKGFQS KNEDNNYVAE TSPLLHANPA 480 ALSRSLNFQE RT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G103100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM428392 | 6e-64 | AM428392.2 Vitis vinifera contig VV78X017201.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611540.1 | 0.0 | cyclic dof factor 3-like isoform X1 | ||||
TrEMBL | A0A251KVI7 | 0.0 | A0A251KVI7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030452m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-94 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G103100.1.p |