PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G100100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 389aa MW: 41706.5 Da PI: 8.167

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G100100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.4	1.5e-39	48	157	2	109
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG++ d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++++ Manes.05G100100.1.p 48 PPKRTSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKFDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSISASHH 137 789******************************************************************999877788888776666666 PP TCP 91 aksaa.kskksqksaasaln 109 +++ +++++ +++ +++n Manes.05G100100.1.p 138 LRNTYsNPNFTAHQQLCMRN 157 66665577777777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.6E-39	52	169	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.808	54	108	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MITMNSDNGR PNFPLQLLES KHLQEPLPPP PPPPPQPSSS SSSSKKPPPK RTSTKDRHTK 60 VEGRGRRIRM PATCAARIFQ LTRELGHKFD GETIEWLLQQ AEPAVIAATG TGTIPANFTS 120 LNISLRSSGS SISASHHLRN TYSNPNFTAH QQLCMRNEWE RNIVVNDASQ QQRRILIPSQ 180 DSLCFSAINS SNNVGGNLNV LQGSSTANKQ EVRGGGETSC LDVTDGETIL ERKRRLENEL 240 AHDQMGSYLL QSTSTGALAA THSPIPATFR MVSSNHNCNN QGISSDAMVA FPSFSANTNM 300 YKGSMFGGLH FMNFPPPMAL LPGQQLGGRD GGSVVGSSIV NESHLGMLAA FNACRPIMGS 360 GGASESPASE SNPQKENGGE DGDDTRRS*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MITMNSDNGR PNFPLQLLES KHLQEPLPPP PPPPPQPSSS SSSSKKPPPK RTSTKDRHTK  60
VEGRGRRIRM PATCAARIFQ LTRELGHKFD GETIEWLLQQ AEPAVIAATG TGTIPANFTS  120
LNISLRSSGS SISASHHLRN TYSNPNFTAH QQLCMRNEWE RNIVVNDASQ QQRRILIPSQ  180
DSLCFSAINS SNNVGGNLNV LQGSSTANKQ EVRGGGETSC LDVTDGETIL ERKRRLENEL  240
AHDQMGSYLL QSTSTGALAA THSPIPATFR MVSSNHNCNN QGISSDAMVA FPSFSANTNM  300
YKGSMFGGLH FMNFPPPMAL LPGQQLGGRD GGSVVGSSIV NESHLGMLAA FNACRPIMGS  360
GGASESPASE SNPQKENGGE DGDDTRRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	235	ERKRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G100100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612117.1	0.0	transcription factor TCP15-like
TrEMBL	A0A2C9VUZ8	0.0	A0A2C9VUZ8_MANES; Uncharacterized protein
STRING	cassava4.1_027347m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	4e-43	TCP family protein

Link Out ? help Back to Top
Phytozome	Manes.05G100100.1.p