PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G087200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 191aa    MW: 21088.8 Da    PI: 8.0595
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G087200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-052345123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H+++H
  Manes.05G087200.1.p 23 YTCSFCKRQFNSAQALGGHMNVH 45
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-42048IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.46E-72050No hitNo description
PROSITE profilePS5015711.2612350IPR007087Zinc finger, C2H2
SMARTSM003550.00312345IPR015880Zinc finger, C2H2-like
PfamPF139129.1E-72346IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDRTSLGSEG DNSSGFLWPQ RNYTCSFCKR QFNSAQALGG HMNVHRRDRA MLIQLPSWVF  60
GCQNPKPNFS SSSSLSLSSS RSTSANFLSY PCTHHHSLIS PSFTSFSSSP SKNSAALECP  120
QLSSSTQLSE DLIKKKSVRA VVQVEEINKG FAEKYELEVL KKNEVISLDL EIGCKDPKEV  180
LDLELRLGCF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-111845229superman protein
2l1o_A2e-111845229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G087200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612158.11e-138zinc finger protein 11
TrEMBLA0A2C9VUK11e-137A0A2C9VUK1_MANES; Uncharacterized protein
STRINGcassava4.1_029357m1e-138(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-27zinc finger protein 11