PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.05G066400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 508aa MW: 54547.6 Da PI: 9.1016 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.1 | 2e-10 | 51 | 75 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++rtG+C yG++C+++H++ Manes.05G066400.1.p 51 LPDCVYYMRTGFCGYGGKCRYNHPR 75 589********************96 PP | |||||||
2 | zf-CCCH | 39.9 | 6.8e-13 | 129 | 153 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tGtCk+G++CkF+H++ Manes.05G066400.1.p 129 EPPCQFYLKTGTCKFGASCKFHHPR 153 79*********************96 PP | |||||||
3 | zf-CCCH | 37.6 | 3.8e-12 | 174 | 199 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Manes.05G066400.1.p 174 GEKECSYYLKTGQCKFGVTCKFHHPQ 199 7899********************97 PP | |||||||
4 | zf-CCCH | 38.6 | 1.8e-12 | 328 | 354 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+F+H++ Manes.05G066400.1.p 328 PGEPECQYYLRTGDCKFGSSCRFHHPR 354 5799*********************96 PP | |||||||
5 | zf-CCCH | 36.1 | 1.1e-11 | 375 | 400 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++r+G Ck+G++CkF H++ Manes.05G066400.1.p 375 GVQPCTFYLRNGNCKFGATCKFDHPM 400 6789********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.685 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-7 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 53 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.108 | 126 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-6 | 126 | 153 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-10 | 129 | 153 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 129 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-5 | 131 | 153 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.84 | 172 | 200 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 174 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-6 | 174 | 200 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 178 | 198 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.873 | 327 | 355 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-6 | 327 | 354 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 329 | 354 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 332 | 356 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 333 | 354 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.244 | 373 | 401 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-7 | 373 | 400 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 375 | 400 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 375 | 404 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 377 | 399 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 508 aa Download sequence Send to blast |
MELYGRNQAR NGLQSGQQPE WSPVGGETGL EESMWRLSLA SSESYPERPG LPDCVYYMRT 60 GFCGYGGKCR YNHPRNRAAF MRLSRMFGSS WFGLFWFSGT TTLPTLGHLV REVEAAVRAT 120 GEYPERVGEP PCQFYLKTGT CKFGASCKFH HPRHGGGSLS HVPLNTHGYP LRPGEKECSY 180 YLKTGQCKFG VTCKFHHPQP AGTSMPESAP QFYQPVQSPS ITIPDQYGGA STGLRVRPQL 240 LAGSYVQGAY GPVLFSPGVV PIPGWSPYSA PVSPVLSPGA QPAVGTTSLY GVTQLSSSAP 300 ALAGPYPSPS SAVGLSSGSK EQSFPERPGE PECQYYLRTG DCKFGSSCRF HHPRDRVAPR 360 TNCVLSPLGL PLRPGVQPCT FYLRNGNCKF GATCKFDHPM GAMRYSPSTS SLIDMPVTPY 420 PVGSLLATLG PSSSSSDLRP ELIGVTKKDP YLSRIPSSGN TSSSSVGLIF SQTGSVPLSE 480 LQHSSQSSVS LPSGRSTRRG GDIHRSS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.05G066400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021613100.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like isoform X1 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A2C9VTZ8 | 0.0 | A0A2C9VTZ8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006834m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.05G066400.1.p |