PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G065900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HB-other

Protein Properties

Length: 1056aa MW: 116493 Da PI: 9.2274

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G065900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.4	4.3e-07	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e++++ g+t +qV+ +F +R + +k Manes.05G065900.1.p 69 KRPRDLLNPKAIKYMQAVFSLKDAISKKESREISAQFGVTVTQVRDFFASQRSRVRK 125 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.171	66	126	IPR001356	Homeobox domain
SMART	SM00389	3.0E-4	68	130	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-4	69	125	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.22E-6	69	129	IPR009057	Homeodomain-like
CDD	cd00086	1.09E-4	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.0E-6	69	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	1.8E-6	246	339	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	4.18E-6	247	338	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence Send to blast
MEALKENLEE IEIGSSVESF HKFLDSQKEL FHSQIDQLQR IVVNQCKLTG VNPLSQEMAA 60 GAMSIKIGKR PRDLLNPKAI KYMQAVFSLK DAISKKESRE ISAQFGVTVT QVRDFFASQR 120 SRVRKLVRLS REKVARTTVR EQPQDEVPAS SDPMMPINLA PLNSVHPDPD PVPLNFAGPN 180 GGPVSSVGPS SVEESPSCST QDDILPGLND LDKNFVENIF ILLRKEETFS GQEKLMEWIL 240 QIQNPSVLNW FLTKGGVMIL ATWLSQAAAE EQTSILLVAL KVLCHLPLHK ALPEHMSAIL 300 HSVNRLRFYR TSDISNRARV LLSRWSKIFA RSQAMKKPSG VKSSVDAQEM ILKQSIDEIM 360 GNELWQPNVG NPEDGVTTPG TLENTRKVEP SQTLKLLPSS TDDSSKKHVL GVSFTRERRK 420 VQLVEQPGQK TASKSPQATK AVSISQSRPM STDDIQKAKM RALFMQGKYG KTGSSSIGTN 480 IMKTESSSKP SNTQSSNLFP VSKAPLQPKT VEHEKPLIVL SKISDKREGS LDPKHKMDSK 540 EPMGEVCRRI QIPWKTPSEI KLNSLWRVGT GENSKEVDVQ KNRNRREIET VYRTVLDIPS 600 NPKEPWDLEM DYDDTLTPDI PVEQPADADA DADADAAETQ VSHNENIVEN TVVAPALSLT 660 QNEGGSAAEP DLELLAVLLK NPELVFALTN AQGGNLSAEE TVKLLDMIKK SGAGLANSLS 720 GFGGEVREKF EVSLPSPTPS SNPGTSGWRP EDAKNPFSQQ GSRRNRVAYT DPVVSTHNSS 780 VDKLTGLVQP QNQASSTRMP QQQASLQMLP QQVQGAMPPF SWPQTTSSTS ENRQPSLVLP 840 SHQSFPSKST VLQTQSSEMG LATKNLPFSS HSLNNFSATA GTSMRIETVN NVKPVPSVSF 900 PMNAPDRRQD SFPMPIATPT PTRPHSLVSE PAVVQASTGN LVSVPDSWRA RQRLASTSAS 960 QVNQTNNDGM FRGSVQPQVR SGPPWERNEY KGDEGFESWS PENSPGRSPE YMQGRNHTGS 1020 GRINTGWKYT PDNGSRQQNH SGRWDHYRNG NRRWR*

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence Send to blast

MEALKENLEE IEIGSSVESF HKFLDSQKEL FHSQIDQLQR IVVNQCKLTG VNPLSQEMAA  60
GAMSIKIGKR PRDLLNPKAI KYMQAVFSLK DAISKKESRE ISAQFGVTVT QVRDFFASQR  120
SRVRKLVRLS REKVARTTVR EQPQDEVPAS SDPMMPINLA PLNSVHPDPD PVPLNFAGPN  180
GGPVSSVGPS SVEESPSCST QDDILPGLND LDKNFVENIF ILLRKEETFS GQEKLMEWIL  240
QIQNPSVLNW FLTKGGVMIL ATWLSQAAAE EQTSILLVAL KVLCHLPLHK ALPEHMSAIL  300
HSVNRLRFYR TSDISNRARV LLSRWSKIFA RSQAMKKPSG VKSSVDAQEM ILKQSIDEIM  360
GNELWQPNVG NPEDGVTTPG TLENTRKVEP SQTLKLLPSS TDDSSKKHVL GVSFTRERRK  420
VQLVEQPGQK TASKSPQATK AVSISQSRPM STDDIQKAKM RALFMQGKYG KTGSSSIGTN  480
IMKTESSSKP SNTQSSNLFP VSKAPLQPKT VEHEKPLIVL SKISDKREGS LDPKHKMDSK  540
EPMGEVCRRI QIPWKTPSEI KLNSLWRVGT GENSKEVDVQ KNRNRREIET VYRTVLDIPS  600
NPKEPWDLEM DYDDTLTPDI PVEQPADADA DADADAAETQ VSHNENIVEN TVVAPALSLT  660
QNEGGSAAEP DLELLAVLLK NPELVFALTN AQGGNLSAEE TVKLLDMIKK SGAGLANSLS  720
GFGGEVREKF EVSLPSPTPS SNPGTSGWRP EDAKNPFSQQ GSRRNRVAYT DPVVSTHNSS  780
VDKLTGLVQP QNQASSTRMP QQQASLQMLP QQVQGAMPPF SWPQTTSSTS ENRQPSLVLP  840
SHQSFPSKST VLQTQSSEMG LATKNLPFSS HSLNNFSATA GTSMRIETVN NVKPVPSVSF  900
PMNAPDRRQD SFPMPIATPT PTRPHSLVSE PAVVQASTGN LVSVPDSWRA RQRLASTSAS  960
QVNQTNNDGM FRGSVQPQVR SGPPWERNEY KGDEGFESWS PENSPGRSPE YMQGRNHTGS  1020
GRINTGWKYT PDNGSRQQNH SGRWDHYRNG NRRWR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G065900.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021611620.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2C9VWC3	0.0	A0A2C9VWC3_MANES; Uncharacterized protein
STRING	cassava4.1_000740m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Manes.05G065900.1.p

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]