PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G056800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 357aa    MW: 39496.6 Da    PI: 9.9116
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G056800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.52.6e-2141132187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                          +W+++e+ aLi+a+ +++ +lrrg+lk+++W+ev++++     +    ++++qC++k+e+l+kry+ + +++++   s+ ss++++f+++
  Manes.05G056800.1.p  41 CWSHDETVALIDAYCDKWYTLRRGNLKANHWQEVADAVarrcPAASPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFSSSWVHFKRM 130
                          8**********************************99966556667799*************************9789************ PP

             trihelix  86 ea 87 
                          +a
  Manes.05G056800.1.p 131 DA 132
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.2E-2340133No hitNo description
SMARTSM005952.4E-1249138IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSAPGAGSPS PQDPTLPSNP LPALPAPPQP STNPRRLPPP CWSHDETVAL IDAYCDKWYT  60
LRRGNLKANH WQEVADAVAR RCPAASPPKT AVQCRHKMEK LRKRYRTEIQ RARSMPVSRF  120
SSSWVHFKRM DAMEKGPQAK MDYNSESDGD DNEDENEEDD DNRGFYMDNH RNGSTIMNTR  180
SIHKLYRNGI GGNTGSNLSG SGSGASAGSG FRIRIPTGVS IAQPGPKFYA KVDQKYGVNP  240
NLSSNSTPKP NFGGGSVSGS GLGSSRVLKG SDETGKKRER EPMEEMVAAI KVLGDGFVRM  300
EQMKMEMARE IETMRMEMEM KRTEMILESQ QRIVEAFAKA FSEKKKKPKR IPSPES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G056800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613951.10.0trihelix transcription factor ASIL2
TrEMBLA0A2C9VTM90.0A0A2C9VTM9_MANES; Uncharacterized protein
STRINGcassava4.1_010599m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-73Trihelix family protein