PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G049900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 438aa MW: 47729.9 Da PI: 7.4344

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G049900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.1	4.1e-15	272	317	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RR++iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Manes.05G049900.1.p 272 HNQSERKRREKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 317 9**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.847	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-20	270	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.31E-17	272	321	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.1E-18	272	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-12	272	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-18	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MSQCVPSWDL HDNPSLAKQS LRSHSNSIAP DVLMLDYEVA ELTWENGQLA MHGLGPPRLL 60 AKPMASTSPS KCTWDKPRAN GTLESIVNQA TRLPKRKPGL ENCGCGSQEL VPWFEHNPAR 120 TAASPTMTMD ATVPCSNRPE DRSTHVMDSV PGSSNCVVGT STDVGSCSGR AATQDEEATV 180 HVKRPRVARV SVVPEWSSRQ SVSGSENFGR DSQQENTSCG RPVTKTATED ENDSVYHSGP 240 FQRDAGDEEE DAKKGNGKSS VSTKRSRAAA IHNQSERKRR EKINQRMKTL QKLVPNSSKT 300 DKASMLDEVI EYLKQLQSQV QMMSRMPLML PMAMQQQLQM SMLSPMNMGM GVMDMNSIAC 360 LNLAGISPVL HPSAFMPMAS WDASADRLQS ACTTAMPDAL SAFLACQSQP MTMDAYSRMA 420 AIYQQLQQQP PASSSKS*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MSQCVPSWDL HDNPSLAKQS LRSHSNSIAP DVLMLDYEVA ELTWENGQLA MHGLGPPRLL  60
AKPMASTSPS KCTWDKPRAN GTLESIVNQA TRLPKRKPGL ENCGCGSQEL VPWFEHNPAR  120
TAASPTMTMD ATVPCSNRPE DRSTHVMDSV PGSSNCVVGT STDVGSCSGR AATQDEEATV  180
HVKRPRVARV SVVPEWSSRQ SVSGSENFGR DSQQENTSCG RPVTKTATED ENDSVYHSGP  240
FQRDAGDEEE DAKKGNGKSS VSTKRSRAAA IHNQSERKRR EKINQRMKTL QKLVPNSSKT  300
DKASMLDEVI EYLKQLQSQV QMMSRMPLML PMAMQQQLQM SMLSPMNMGM GVMDMNSIAC  360
LNLAGISPVL HPSAFMPMAS WDASADRLQS ACTTAMPDAL SAFLACQSQP MTMDAYSRMA  420
AIYQQLQQQP PASSSKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	280	ERKRRE
2	276	281	RKRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G049900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021611917.1	0.0	transcription factor UNE10-like isoform X1
Swissprot	Q8GZ38	1e-103	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A2C9VTC1	0.0	A0A2C9VTC1_MANES; Uncharacterized protein
STRING	cassava4.1_027046m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5676	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-104	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.05G049900.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]