PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G042000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27602.5 Da    PI: 9.3765
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G042000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92.1e-31958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gk+ye+ 
  Manes.05G042000.1.p  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKVYEFG 58
                         79**********************************************95 PP
2K-box98.78.6e-33811701099
                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                           e++++ ++qel+kLk+++e+Lqr+qRhllGedL++LslkeLq+Le+qLe +l   R++K+++l+eq+e+l+kke+ l + nk+L+ kl+
  Manes.05G042000.1.p  81 IERETQGWYQELTKLKAKYESLQRTQRHLLGEDLGPLSLKELQNLEKQLEGALALARQRKTQILIEQMEDLRKKERHLGNLNKQLKLKLD 170
                          46779*********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.165161IPR002100Transcription factor, MADS-box
CDDcd002658.62E-44272No hitNo description
SuperFamilySSF554555.1E-33284IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2882169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.51785175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGRLELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKVYEFGSA  60
GTTKTLERYQ RCCFTPQGNS IERETQGWYQ ELTKLKAKYE SLQRTQRHLL GEDLGPLSLK  120
ELQNLEKQLE GALALARQRK TQILIEQMED LRKKERHLGN LNKQLKLKLD AEVQSLALQD  180
LWNSGAADGH SNFALHAPQS NHLDCEPGPV LQIGYHHFVE AEGSSVPRSM VSETNFERGW  240
VL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-219016922101Developmental protein SEPALLATA 3
4ox0_B2e-219016922101Developmental protein SEPALLATA 3
4ox0_C2e-219016922101Developmental protein SEPALLATA 3
4ox0_D2e-219016922101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G042000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614438.11e-179MADS-box transcription factor 6
SwissprotQ8LLR11e-141MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A2C9VVL41e-178A0A2C9VVL4_MANES; Uncharacterized protein
STRINGcassava4.1_022693m1e-179(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.14e-89AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]