PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G041000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 347aa    MW: 36898.8 Da    PI: 8.2511
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G041000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.21e-36761772103
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91 
                          ++kk + +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai ++tgt++ +a ++ +++   +  + s+++++
  Manes.05G041000.1.p  76 PPKKPSGKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIVAATGTGTVPAIAM-SVNGTLKIPTTSNANSE 164
                          78**************************************************************99999555.22222222223333333 PP

                  TCP  92 ksaa.kskksqks 103
                          +s++  +kk++++
  Manes.05G041000.1.p 165 PSDPfAKKKRKRP 177
                          3333222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2981161IPR005333Transcription factor, TCP
PROSITE profilePS5136926.89382136IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTTNHKQEFE EDDETRSTDD FRINGVTDAR HDKVEPTTES TLSAKEVAPK EEPDTEERSS  60
LPLCVMPVAV HVPAAPPKKP SGKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE  120
TIRWLLEHAE PAIVAATGTG TVPAIAMSVN GTLKIPTTSN ANSEPSDPFA KKKRKRPANS  180
EYIDISDAAV SISAPLAPIT TSPPPQPVAA IATVVPQGFV PMWAIPSNAI VPGAFFMVPP  240
LATSIVGPSN QPQIFAFPAA ATPLINISAR PISSFASYMQ RAAVATPASS SHISGTKPAK  300
ATSVMASSSS SAPASSTTST TQMLRDFSLE VYDKEELQFM TRSSKQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G041000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612014.10.0transcription factor TCP9-like
SwissprotO646477e-97TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A2C9VVK40.0A0A2C9VVK4_MANES; Uncharacterized protein
STRINGcassava4.1_011401m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-89TCP family protein