PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G038200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 506aa    MW: 56113.1 Da    PI: 8.8002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G038200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.2e-195096148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd++lv av+++  ++Wk+Ia++++  Rt+ qc +rwqk+l
  Manes.05G038200.1.p 50 KGGWTEEEDKILVAAVEKFNCRNWKKIAECVP-DRTDVQCLHRWQKVL 96
                         688*****************************.************986 PP
2Myb_DNA-binding49.78.7e-16102148148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W  eEd+l+ d+v + G + W+ Ia++++ gR +kqc++rw+++l
  Manes.05G038200.1.p 102 KGPWKREEDDLIRDLVGKQGIKKWSEIAKHLP-GRIGKQCRERWHNHL 148
                          79******************************.*************97 PP
3Myb_DNA-binding551.9e-17154196145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r +WT+eE++ l+da+k +G++ W+ Ia+ ++ gRt++ +k++w+
  Manes.05G038200.1.p 154 RTAWTKEEELTLIDAHKIYGNK-WAEIAKFLN-GRTENAIKNHWN 196
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0014596IPR017930Myb domain
SMARTSM007174.4E-164998IPR001005SANT/Myb domain
PfamPF002494.1E-175096IPR001005SANT/Myb domain
SuperFamilySSF466892.53E-1951116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-2252111IPR009057Homeodomain-like
CDDcd001671.62E-145396No hitNo description
PROSITE profilePS5129429.67297152IPR017930Myb domain
SuperFamilySSF466899.35E-3099195IPR009057Homeodomain-like
SMARTSM007171.1E-14101150IPR001005SANT/Myb domain
CDDcd001677.75E-13104148No hitNo description
PfamPF139212.5E-16105163No hitNo description
Gene3DG3DSA:1.10.10.602.6E-26112155IPR009057Homeodomain-like
SMARTSM007171.1E-16153201IPR001005SANT/Myb domain
PROSITE profilePS5129420.916153203IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-21156203IPR009057Homeodomain-like
CDDcd001671.49E-12156196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MVEEAALSDS EKGGLVSARP SVHDTSANNA VTDPISVKGR TTGPTRRSTK GGWTEEEDKI  60
LVAAVEKFNC RNWKKIAECV PDRTDVQCLH RWQKVLNPDL VKGPWKREED DLIRDLVGKQ  120
GIKKWSEIAK HLPGRIGKQC RERWHNHLNP EIKRTAWTKE EELTLIDAHK IYGNKWAEIA  180
KFLNGRTENA IKNHWNCSVK KKIESCSARK FDIHSYNKGA EIRKSEMDNQ SFDERMNPER  240
SMHACPLDLA LGNSKTREFQ LSASDKGNCK YAVKELYFGT LDAKPSPAFT LTSVEWKGSD  300
NNANKIEHTN HLSNWSSKLC NTSSDDVARL QLPCERTLEL SKTVNSLHSG ALSAPLTIAS  360
STVPGYDIKT AELDDKKKGA GDPESVELNC GLLSSESLQL DKVLLQTGSA PSTGSYPRTT  420
TLSPVSSCAP LSHNGRISHD RSSPESILSI LRSAARSFKN TPSIIRKRSS TSRAETFGDT  480
KSVEKRLEYA FNIGCDSDGK RFGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-64502036159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-64502036159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G038200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612529.10.0transcription factor MYB3R-2
TrEMBLA0A2C9VV920.0A0A2C9VV92_MANES; Uncharacterized protein
STRINGcassava4.1_033700m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.19e-88Homeodomain-like protein