PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G032600.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 499aa    MW: 56430.4 Da    PI: 6.3396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G032600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-08393442147
                          TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                          +++WT+ E+ +++  v++ ++      W+ I rt++ +R +++++s+++++
  Manes.05G032600.3.p 393 KLSWTEAEERKFKAIVQLNPSSlgkcFWDEIFRTFP-TREREDLVSYYFNV 442
                          689***************99889999**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511569.455294335IPR000949ELM2 domain
SMARTSM011895.9E-4296347IPR000949ELM2 domain
CDDcd001671.87E-4395443No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGGVLELGSE FKGLFSNITD WKSVLNVSAK VDSNREEKCI VDDEESVHID TGRSVVNFVE  60
VGKLSYNVAK NMGPDYFSDR HNNCKDFQEN LQSNSTSVKL CSEGDVKGAM VGMDGGKRDE  120
NVDENEVMVL DSDAVEEFIL GRKRKRESMC RVVNWITGIA RNPCDCVVDS LPERSKWDSY  180
GNGELWKQVL LVREALFLKR HVDSSAEKST CQSLQKNRKM HPCMYDDQVG STYNFRERLK  240
CSKKLLHKKN VFQAESCSEL SSSTTETDSD SCTKGIRDGD SSTKHSAVDL PVEKSIPLGP  300
DFQAEIPEWT GVIPESDPKW AGTRVWPPEK VDSRLIIERE PIGKGRQDSC GCEVPKSVEC  360
VRFHNAERRL KVKRELGAGF LHWRFDKMGE DVKLSWTEAE ERKFKAIVQL NPSSLGKCFW  420
DEIFRTFPTR EREDLVSYYF NVFLLQRRAQ QNRVTPNNID SDDDESECGL ATNSSRREAP  480
KSPGSLLYSA KKPRKNVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367374RRLKVKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G032600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613859.10.0AT-rich interactive domain-containing protein 1-like
RefseqXP_021613860.10.0AT-rich interactive domain-containing protein 1-like
RefseqXP_021613861.10.0AT-rich interactive domain-containing protein 1-like
RefseqXP_021613863.10.0AT-rich interactive domain-containing protein 1-like
RefseqXP_021613864.10.0AT-rich interactive domain-containing protein 1-like
RefseqXP_021613865.10.0AT-rich interactive domain-containing protein 1-like
RefseqXP_021613866.10.0AT-rich interactive domain-containing protein 1-like
TrEMBLA0A251KSS30.0A0A251KSS3_MANES; Uncharacterized protein
STRINGcassava4.1_003489m0.0(Manihot esculenta)