PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G020600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 290aa MW: 31393.6 Da PI: 8.7681

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G020600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	35	95	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Manes.05G020600.1.p 35 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSA 95 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	34	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-33	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDAASWPQDV KLVKPMEEIS SNACTRPVLE RKARPQEQLN CPRCNSTNTK FCYYNNYSLT 60 QPRYFCKTCR RYWTEGGSLR NVPVGGGSRK NKRSASSSSS SSAAVSSSSS ASSKLPDLNP 120 PSLSQFSSPN PKTHEGQDLN LAFPAIQENQ GISHFLEVPK TENNNNSQHN SSSSPSSSPY 180 TSSPLSALEL LRTGIDSRGL NSFIPTLMPE SNTLYSSGFP MQEFKPTLSF SVEGLGSRYG 240 VQENGGRTLF PFGEMKQLSS TTEVDQNKGQ GTSSNGYWNG MFGGGGGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G020600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612081.1	0.0	dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q9ZPY0	9e-69	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A2C9VSL4	0.0	A0A2C9VSL4_MANES; Uncharacterized protein
STRING	cassava4.1_012995m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	4e-67	Dof family protein

Link Out ? help Back to Top
Phytozome	Manes.05G020600.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]