PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.05G015100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 412aa MW: 46631.6 Da PI: 6.9714 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.5 | 2e-31 | 114 | 218 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 f+kv tpsdv+k++rlv+pk++ae++ + ++e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L+ gD+v F++ Manes.05G015100.1.p 114 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDPGDIVSFQRGv 203 89***************************955567889*************************************************665 PP SS.SEE..EEEEE-S CS B3 86 gr.sefelvvkvfrk 99 g+ + +l++ ++r+ Manes.05G015100.1.p 204 GEsGKHRLYIDWRRR 218 777888899999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-41 | 105 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-29 | 111 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.63E-27 | 112 | 213 | No hit | No description |
PROSITE profile | PS50863 | 14.635 | 114 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-29 | 114 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-22 | 114 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 412 aa Download sequence Send to blast |
MNFVEQGRVY CDKEEQEEEE EGEEEEEMTP NKLPFSSPSS SSSSSTKYRN FLPQHQDLWL 60 GSSESQQEYK SRESSSLNFD KRLELMDLTL GNDNGTVNTG GTTHEQPIER EHMFDKVVTP 120 SDVGKLNRLV IPKQHAEKYF PLDSTSNEKG LLLNFEDRNG KPWRFRYSYW NSSQSYVMTK 180 GWSRFVKEKK LDPGDIVSFQ RGVGESGKHR LYIDWRRRPN APDPTSFAHL ELQNQLHFPQ 240 SLRWGRLYSL PQPLSSIARP YEQPQFQHLS YGIHHQPYHQ QYHYNQQGQY YLRPAGALPI 300 GAVHQQGGGQ APIVIDSVPV VHGRSVGKRL RLFGVNVECP TQDDRSSFSS SSGTIQAHGS 360 STTMGSFSPH LTASSLQPPQ SRLPSSGPMA TTQEAEFSKK GKTSLSFDLD L* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-66 | 109 | 221 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-66 | 109 | 221 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.05G015100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611448.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X2 | ||||
Swissprot | O82799 | 3e-81 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A2C9VSH1 | 0.0 | A0A2C9VSH1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008697m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 9e-77 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.05G015100.1.p |