PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G012100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 271aa    MW: 30826.5 Da    PI: 5.2141
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G012100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-172370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd +l+++v+ +G g W++ ar+ g++Rt+k+c++rw++yl
  Manes.05G012100.1.p 23 KGPWTVEEDAILAEYVAIHGEGGWNAAARCAGLKRTGKSCRLRWLNYL 70
                         79********************************************97 PP
2Myb_DNA-binding48.71.7e-1576119146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Manes.05G012100.1.p  76 RGNITLQEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 119
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4061870IPR017930Myb domain
SuperFamilySSF466897.11E-3120117IPR009057Homeodomain-like
SMARTSM007173.5E-132272IPR001005SANT/Myb domain
PfamPF002491.4E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-212477IPR009057Homeodomain-like
CDDcd001674.92E-102570No hitNo description
PROSITE profilePS5129423.13671125IPR017930Myb domain
SMARTSM007171.1E-1375123IPR001005SANT/Myb domain
PfamPF002492.2E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2278124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGAQVRNYGC ATYQNEEDAD IRKGPWTVEE DAILAEYVAI HGEGGWNAAA RCAGLKRTGK  60
SCRLRWLNYL RPDVRRGNIT LQEQLLILEL HSRWGNRWSK IAQYLPGRTD NEIKNYWRTR  120
VQKQAKQLKC DVNSKQFRDA MRYIWMPRLV ERIQAASGSS TGHSNYSSIN HNGVPISNET  180
GEINNPMIEL VMPEPSGSSL ESLDTQVSPV SDVTEYQNPT SVQNVSGLYP EGESDRWIEM  240
EMQSNIVNGG ESLESLWNEE NIWFLQQQLM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24201254108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G012100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346642e-43KM034664.1 Jatropha curcas clone JcMYB044 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612508.10.0transcription factor MYB78-like
SwissprotQ9FGY33e-85MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A2C9VSC80.0A0A2C9VSC8_MANES; Uncharacterized protein
STRINGcassava4.1_013877m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-83myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]