PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G008000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 526aa MW: 57976.1 Da PI: 9.0084 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 8e-14 | 367 | 416 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rr+ h++ Er+RRd+i +++ L+ llP++ +K++K+++L A+eY+k Lq Manes.05G008000.1.p 367 RREVHKQSERKRRDKITKKMRALQALLPNS-----TKVDKVSVLDNAIEYLKTLQ 416 799**************************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.35E-14 | 364 | 420 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 364 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-17 | 365 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.475 | 366 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-11 | 367 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-13 | 372 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MADEFAELVW ENGQILMRGR STCPKICTSK KPRLRTENNI PDRGDLFKNK RSVQDDHHSD 60 DLFPGSYKND FNIFLGTTRN NTYDEHLTES QIVPECEDEN FRLGNDASPV EIPQITKARR 120 GPLYESSLQR CQASVSISRS IATGSQSLSS MGRLPNSNLQ QLNSRTDKDL RLRNFSLFLR 180 PAMLSKVDDQ HQGATEPADG PSSLRVQGLK SNQDKTPADD TALVLESTSG SGNAKDFYKH 240 QDLVTVKTDQ IQQIAKTSEE SPQDEQSEAP DHRNAIKSKR FQQRAPISNS SLQANTVEGN 300 PDREKSKDQL AVATSLCSWG ASNDLSYSTL RRNNKDKEAM VSSSETDEGD QQVPKPAFAH 360 AGAKRKRREV HKQSERKRRD KITKKMRALQ ALLPNSTKVD KVSVLDNAIE YLKTLQLQLQ 420 IMSQGTSFCM PPMIVGTGMQ PTHIQATNLA HFPTMGLQMD TRIPMGVGCT PAMFSNPAML 480 GGVLPMPFIP PVSAMPFSGA ATPVGFARSA PSLRSNGSIV QNNNS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 364 | 378 | RKRREVHKQSERKRR |
2 | 374 | 379 | ERKRRD |
3 | 375 | 380 | RKRRDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G008000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX147466 | 0.0 | KX147466.1 Manihot esculenta cultivar KU50 phytochrome interacting factor 3-like 1 protein (PIL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021613189.1 | 0.0 | transcription factor PIF3-like | ||||
TrEMBL | A0A2C9VSA0 | 0.0 | A0A2C9VSA0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_005881m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46970.1 | 6e-26 | phytochrome interacting factor 3-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G008000.1.p |