PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G004300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 262aa    MW: 29617.6 Da    PI: 5.0841
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G004300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.66.9e-3053111259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v++itY+++Hnh+
  Manes.05G004300.1.p  53 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASVLIITYTSTHNHT 111
                          699***********************9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-3145112IPR003657WRKY domain
SuperFamilySSF1182902.75E-2551113IPR003657WRKY domain
SMARTSM007741.2E-3452112IPR003657WRKY domain
PROSITE profilePS5081130.43553113IPR003657WRKY domain
PfamPF031069.7E-2554110IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDGSPCSPKL DSRVSDLKSE TQASKRRKAV EKTVVTVRIG ANAGKEKHEG PPSDFWSWRK  60
YGQKPIKGSP YPRGYYRCST SKGCSAKKQV ERCRTDASVL IITYTSTHNH TGPDLHNTNL  120
NQQLKESQTE STYEPHPTTP KQEQQEEDNQ NENHPIVAIS SKDDNEGHNF HYLQSSINCS  180
DDIMVNQEDP FTQNPAEKTD DTLTILLDEE PISCPRMMTF ATPKSEENDF FDELEELPTY  240
SAFTSFMRGN FYDERIPVVP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-19531131779Disease resistance protein RRS1
5w3x_D3e-19531131779Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G004300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9146550.0JQ914655.1 Hevea brasiliensis WRKY super family protein (WRKY11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611426.10.0probable WRKY transcription factor 35
TrEMBLA0A2C9VS430.0A0A2C9VS43_MANES; Uncharacterized protein
STRINGcassava4.1_029757m1e-158(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-35WRKY DNA-binding protein 35