PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G001500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 195aa    MW: 21081.8 Da    PI: 10.5594
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G001500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000184870123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C + F ++  L  H++ H
  Manes.05G001500.1.p 48 FECHFCRRAFANSQALGGHQNAH 70
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-64475No hitNo description
Gene3DG3DSA:3.30.160.602.7E-44674IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6974875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAESSAPSQK SYDHKPAPPS AVKLFGFPLT EHHEISAKTE NCTESRKFEC HFCRRAFANS  60
QALGGHQNAH KRERQRARRV QYHCDRRILA GAPVPSSHAV KASSSSISAG GFSSIGFAAK  120
FRPQAAVSSR PSSTRPQLLL PSSTSQLTSL IYVAQPLRSG NAMPSFVEFP GKLLSDEDVG  180
IDLRLKLTPS VSHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G001500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614299.11e-139zinc finger protein 6-like
TrEMBLA0A2C9VRY21e-138A0A2C9VRY2_MANES; Uncharacterized protein
STRINGcassava4.1_023288m1e-139(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.15e-16C2H2 family protein