PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G162400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 297aa    MW: 31509.2 Da    PI: 7.2079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G162400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.9e-111256446
                         S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         WT e d+ + da + ++ +   +W++Ia+ ++ g+tl+++k ++  
  Manes.04G162400.1.p 12 WTREQDKAFEDALATYPEDaldRWEKIAADVP-GKTLEEVKVHYEL 56
                         ********************************.**********975 PP
2Myb_DNA-binding422.2e-13119163347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Manes.04G162400.1.p 119 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163
                          6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.506762IPR017884SANT domain
SMARTSM007173.2E-8860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-41159IPR009057Homeodomain-like
CDDcd001672.61E-91258No hitNo description
SuperFamilySSF466894.02E-111265IPR009057Homeodomain-like
PfamPF002497.4E-81255IPR001005SANT/Myb domain
PROSITE profilePS5129417.581111168IPR017930Myb domain
SuperFamilySSF466891.22E-16114169IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17116166IPR006447Myb domain, plants
SMARTSM007173.2E-10116166IPR001005SANT/Myb domain
CDDcd001678.46E-10119164No hitNo description
Gene3DG3DSA:1.10.10.601.4E-10119162IPR009057Homeodomain-like
PfamPF002492.7E-11119163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTVDEVGCSS LWTREQDKAF EDALATYPED ALDRWEKIAA DVPGKTLEEV KVHYELLLED  60
LNQIEAGCVP LPNYSEGSAS HAGDEGTSKK SGHLGHHSSE STHGNKASRS DQERRKGIAW  120
TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH  180
DITNVGNGEN SAPQGPITGQ TNGSAAGGSV GKVGKLPPHH PAGPPGIGVY GPPTMGQPIG  240
GPLVSAVGTP VNLSAPAHMA YGVRAPVPGT VSGVLPGAPM SMGPMTYPMP PTTAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1812851184RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G162400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610657.10.0transcription factor SRM1-like
RefseqXP_021610658.10.0transcription factor SRM1-like
RefseqXP_021610659.10.0transcription factor SRM1-like
RefseqXP_021610660.10.0transcription factor SRM1-like
RefseqXP_021610661.10.0transcription factor SRM1-like
SwissprotQ9FNN61e-123SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A251L5660.0A0A251L566_MANES; Uncharacterized protein
STRINGcassava4.1_012921m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-109MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]