PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G158200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 333aa    MW: 36930.8 Da    PI: 10.0735
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G158200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.6e-1546128185
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W++  v +L+ea+++++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + +++        s++ ++ +l
  Manes.04G158200.1.p  46 EWSEGAVSCLLEAYESKWILRNRAKLKGHDWEDVARYVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADA------SSWHLYPRL 128
                          5*************************************854444555566679**************9999886......357777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-1844129No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDKETNQESP SLPSNNNSIK EDPSRKRLSA TGAGGGGGGD RLKRDEWSEG AVSCLLEAYE  60
SKWILRNRAK LKGHDWEDVA RYVSSRANCT KSPKTQTQCK NKIESMKKRY RSESATADAS  120
SWHLYPRLDL LLRGSSAAAA VAPPPPQQQP PPSLQASNHP PPLILLETSH LLPQLPPQPP  180
LPPAIVTAQN SHGSNGVDRG AKEDGDGTKL SDHVSDKNVM DTDSSTPALY SDKEKLRSKK  240
LKMRVEQKKR RRREEWEIAD SIRWLAEVVV RSEKARMDAM REIEKMRIEA EAKRGEMDLK  300
ITEIIANTQL EIAKLFARVG KGVDSSLRIG RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238249KKLKMRVEQKKR
2246252QKKRRRR
3247252KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G158200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609605.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A2C9W2Y80.0A0A2C9W2Y8_MANES; Uncharacterized protein
STRINGcassava4.1_011546m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-103sequence-specific DNA binding transcription factors