PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G155300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YC

Protein Properties

Length: 304aa MW: 33433.8 Da PI: 4.9691

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G155300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.2	1.9e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl +iv r Manes.04G155300.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSALHLKHCVQSYNVFDFLREIVSR 86 5789*************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.6E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.0E-20	4	92	IPR009072	Histone-fold
Pfam	PF00808	3.4E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMSALHLKHC VQSYNVFDFL REIVSRVPDY SHGHSDNSAD HRIVQKRKPI VDECNDSDEE 120 LKRSKVHEMS HAGSSGRGRG RGRGRGRGRG ARNVERESSH RDIESEPSTT LQQNLKNNST 180 PGMTMDNGSD QKEMLKEDMI VSDGANASER NFDLNADVND NEDTKAAGAT ATTATTATST 240 ATATATATTV VDSSSSVPTT ETNHEEYPGW SVSEMDKMAI DPLQLAQLGT RLDEEEEDYD 300 EEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-20	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	148	RGRGRGRGRGR
2	140	149	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G155300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610750.1	0.0	dr1-associated corepressor homolog isoform X1
Refseq	XP_021610751.1	0.0	dr1-associated corepressor homolog isoform X1
TrEMBL	A0A2C9W2T7	0.0	A0A2C9W2T7_MANES; Uncharacterized protein
STRING	cassava4.1_012635m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-74	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Manes.04G155300.1.p