PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G153700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 567aa MW: 61799.7 Da PI: 5.0883 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.6e-18 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l Manes.04G153700.1.p 40 KGPWTSAEDAILIEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.2e-17 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++ Manes.04G153700.1.p 93 KGAFTQEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.441 | 35 | 87 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-16 | 39 | 89 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.24E-31 | 39 | 134 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-16 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-25 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.52E-12 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 26.872 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-17 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-16 | 93 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-26 | 95 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-12 | 95 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MSRTTNESDD GVLSKDQTES PLAEEGSCGG SANGGVVLKK GPWTSAEDAI LIEYVKKHGE 60 GNWNAVQKHS GLSRCGKSCR LRWANHLRPN LKKGAFTQEE EQLIIELHAK MGNKWARMAA 120 HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEVSLQALHE SQRGLNISGI NSGDKGHQDL 180 CRTNNYEIPD VIFDSLKANH GISPYVPELP DITASSMLMK GLGSSQYGSF MLPTIHRQKR 240 LRESTTLIPG YGGSVKTEFP LFDQFQGNPC DKVAQSFGLS FPFDPDPTNK NPQSFGDNQG 300 SHTFANGNFS ASKPASGLVK MELPSLQYPD IDLGSWGTSP PPLLETVDTF IQSPPMGTVE 360 CSPRNSGLLD ALLQEAKTLS SGKHHSSEKS SNSSTVTPGE LAESSALNKC KTEWEDYGDP 420 LSPLGHTATS LFSECTPMST SGSSLDETPV TETLTGCNVK SELTTRAWSP EREQETTTRL 480 NITRPDALLA SDWIEQDSSY VKDQVVMTDN IASLLGDDLS SDYKQMSAEA STSNEGWGLS 540 SCAWNNMPAV CQMSEFPSEN CYLSNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-32 | 38 | 141 | 5 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G153700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021610505.1 | 0.0 | transcription factor MYB33-like | ||||
Refseq | XP_021610506.1 | 0.0 | transcription factor MYB33-like | ||||
Refseq | XP_021610507.1 | 0.0 | transcription factor MYB33-like | ||||
Refseq | XP_021610508.1 | 0.0 | transcription factor MYB33-like | ||||
TrEMBL | A0A251L523 | 0.0 | A0A251L523_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_004606m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-139 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G153700.1.p |