PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G148700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 415aa    MW: 46152.1 Da    PI: 9.3953
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G148700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.16.3e-15120207186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k+    +  +  s++p+f++l+
  Manes.04G148700.1.p 120 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYKKAAKTDIQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWPFFERLD 207
                          7*************************************84333344455778******************99997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-26118209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MVFSVNSFPW MKLTLFNYLA GNSPHHAGDG NSYAFPIIFL HLAPSPTSLF STSMDDDEEI  60
QSHTSEAIGS PSLSPPNGRI TVTVAAGPPS SLPQQQNINN LALTVPIHQP KTNGGGREDC  120
WSEGATAVLI DAWGERYLEL SRGNLKQKHW KEVADIVSSR EDYKKAAKTD IQCKNRIDTV  180
KKKYKLEKAK IAAGGGPSKW PFFERLDQLI GPTAKIPVTA ASLSSKVPMG IPVGIHSGGA  240
SGSNQYQFHE GKAQMKSNQI TKNHNVKPQF RKRSQVETES SSEEEEENFP DSEDSLPPEK  300
KSRVVVQRGV NTKEVKERKG WGNSIRMLTQ AILKFGEVYE QAESMKLQQV MEMEKTRMKF  360
AKELELQRMQ FFMKTQMEIS QLKCSRRGGN VSHQNHHISG NNIIHTNNNS DSDN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G148700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609286.10.0trihelix transcription factor ASIL2-like
SwissprotQ9LJG86e-99ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2C9W4390.0A0A2C9W439_MANES; Uncharacterized protein
STRINGcassava4.1_009403m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-87sequence-specific DNA binding transcription factors