PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G144700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 346aa    MW: 38960 Da    PI: 8.256
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G144700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.7e-2477120144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e
  Manes.04G144700.1.p  77 DPEPGRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVE 120
                          79***************************************986 PP
2QLQ522.1e-181146136
                  QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         s+FT++Q+q+L++ +l+yKy+++++P+PpeL+  ++
  Manes.04G144700.1.p 11 SPFTPTQWQELEHHALIYKYMVSGVPIPPELIYSVK 46
                         89*****************************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-91147IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-121245IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.6241247IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.13377121IPR014977WRC domain
PfamPF088794.9E-2178120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLNATNTRNR SPFTPTQWQE LEHHALIYKY MVSGVPIPPE LIYSVKRSLE SSLASRLFPH  60
QSLGWGCFQV GFGRKADPEP GRCRRTDGKK WRCSKEAHPD SKYCERHMHR GRNRSRKPVE  120
LASTITSSTA ATTTVINPLP SINRNLPAIT SPSASSYSFS SLSSAVEPEY HVVHQNPSHS  180
TIFNPFVYPH SSSSRPHGSG FSPQNSTTHN LFLDPGSSSH SDKDYRYFHG MREDLDERTF  240
FPEDSGSLRT LQDSYQQLAT SSDKGYSQSQ FESIADSSKE EEDHQQQHCF VLGTDFKSSA  300
ARPIKLEKES ETQKLLHHFF GEWPPKNSDP WLDLASSSRR HTAGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G144700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359132e-53AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611178.10.0growth-regulating factor 5-like
TrEMBLA0A2C9W3Y50.0A0A2C9W3Y5_MANES; Uncharacterized protein
STRINGcassava4.1_024195m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-67growth-regulating factor 5